Burkholderia cenocepacia AU 1054, BCEN_RS10180

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 89 294 1.2E-39
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 59 22.079
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 5 62 2.2E-16
CDD cd08472 PBP2_CrgA_like_3 92 293 4.72344E-110
SUPERFAMILY SSF53850 89 297 1.39E-44
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 4 85 6.19E-20
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 3 88 6.3E-26
Gene3D G3DSA:3.40.190.10 163 265 1.7E-66
Gene3D G3DSA:3.40.190.10 91 292 1.7E-66

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.