Burkholderia cenocepacia AU 1054, BCEN_RS03345

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 7 87 2.36E-19
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 92 299 1.1E-35
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 7 95 7.8E-26
SUPERFAMILY SSF53850 93 302 8.69E-38
CDD cd08473 PBP2_CrgA_like_4 94 295 4.23424E-95
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 8 67 1.1E-15
Gene3D G3DSA:3.40.190.10 169 270 2.8E-55
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 6 63 19.865
Gene3D G3DSA:3.40.190.10 96 297 2.8E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.