Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0071472 | cellular response to salt stress | Inferred from Mutant Phenotype | ECO:0000315 mutant phenotype evidence used in manual assertion |
18227267 | Reviewed by curator |
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence or Structural Similarity
Term mapped from: UniprotKB:Q0P6M2
|
ECO:0000250 sequence similarity evidence used in manual assertion |
18227267 | Reviewed by curator |
Biological Process | GO:0034605 | cellular response to heat | Inferred from Mutant Phenotype | ECO:0000315 mutant phenotype evidence used in manual assertion |
18227267 | Reviewed by curator |
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Gene3D | G3DSA:1.10.1740.10 | 1 | 122 | 6.1E-42 | |||
CDD | cd06171 | Sigma70_r4 | 131 | 183 | 7.18945E-14 | ||
SUPERFAMILY | SSF88659 | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 124 | 187 | 1.81E-18 | |
TIGRFAM | TIGR02939 | RpoE_Sigma70: RNA polymerase sigma factor RpoE | IPR014286 | RNA polymerase sigma-70 RpoE type | 1 | 191 | 4.0E-98 |
Pfam | PF08281 | Sigma-70, region 4 | IPR013249 | RNA polymerase sigma factor 70, region 4 type 2 | 134 | 182 | 6.2E-19 |
CDD | cd17305 | PIPKc_PIP5KII | 24 | 87 | 0.00896009 | ||
SUPERFAMILY | SSF88946 | IPR013325 | RNA polymerase sigma factor, region 2 | 3 | 109 | 1.02E-32 | |
Gene3D | G3DSA:1.10.10.10 | IPR036388 | Winged helix-like DNA-binding domain superfamily | 123 | 192 | 1.4E-23 | |
ProSitePatterns | PS01063 | Sigma-70 factors ECF subfamily signature. | IPR000838 | RNA polymerase sigma factor 70, ECF, conserved site | 47 | 78 | - |
TIGRFAM | TIGR02937 | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family | IPR014284 | RNA polymerase sigma-70 like domain | 21 | 186 | 1.6E-35 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 25 | 92 | 5.2E-20 |