Burkholderia cenocepacia K56-2Valvano

Strain Overview
Organism Name Burkholderia cenocepacia K56-2Valvano
Species Burkholderia cenocepacia
Strain K56-2Valvano
Description/Title Generic sample from Burkholderia cenocepacia K56-2Valvano
Annotated Genes 6986
Partial Genes 84
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Canada: Toronto
Isolation Source sputum
Sample Provider
Name
E-mail
Institution J. Craig Venter Institute
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 227
gltB
11		 gyrB
9		 trpB
12		 phaC
6		 recA
14		 atpD
22		 lepA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000333155.2
Assembly Status latest
Scaffolds
Contigs 19
Contig N50 841011
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN00255233
NCBI Taxonomy ID 985076
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6986
CDS 6793
pseudo 98
tRNA 67
rRNA 23
ncRNA 5

Subcellular Localization

Localization Count
Cytoplasmic 2975
Cytoplasmic Membrane 1463
Periplasmic 236
Outer Membrane 154
Extracellular 97
Unknown 1911
Unknown (This protein may have multiple localization sites) 189
Flagellar 13
Fimbrial 4
T3SS 1

Replicons

19 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF