Burkholderia cenocepacia J2315

Strain Overview
Organism Name Burkholderia cenocepacia J2315
Species Burkholderia cenocepacia
Strain J2315
Description/Title DNA sample from a human male participant in the dbGaP study "Framingham SHARe Peri-Aortic Fat"
Annotated Genes 7298
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name United Kingdom: Edinburgh
Isolation Source sputum
Sample Provider
Name
E-mail
Institution European Bioinformatics Institute
Date Collected 1989

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc -
lepA
11,11		 gyrB
9		 atpD
15		 gltB
11		 phaC
6		 trpB
12		 recA
14
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000009485.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMEA1705928
NCBI Taxonomy ID 9606
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia cenocepacia J2315 chromosome 1, complete genome.
Burkholderia cenocepacia J2315 chromosome 2, complete genome.
Burkholderia cenocepacia J2315 chromosome 3, complete genome.
Burkholderia cenocepacia J2315 pBCJ2315 plasmid, complete genome.

Annotated Features

Feature Count
gene 7281
CDS 7117
pseudo 121
tRNA 74
misc_RNA 21
rRNA 18
ncRNA 14

Subcellular Localization

Localization Count
Cytoplasmic 3138
Cytoplasmic Membrane 1518
Periplasmic 235
Outer Membrane 161
Extracellular 102
Unknown 2061
Unknown (This protein may have multiple localization sites) 211
Flagellar 18
Fimbrial 6
Host Associated 1
T3SS 1

Breakdown by COG Category

Feature Count
General function prediction only 731
Transcription 704
Amino acid transport and metabolism 604
Function unknown 509
Carbohydrate transport and metabolism 434
Energy production and conversion 405
Cell wall/membrane/envelope biogenesis 390
Lipid transport and metabolism 308
Signal transduction mechanisms 300
Inorganic ion transport and metabolism 287
Replication, recombination and repair 241
Coenzyme transport and metabolism 220
Secondary metabolites biosynthesis, transport and catabolism 214
Translation, ribosomal structure and biogenesis 205
Posttranslational modification, protein turnover, chaperones 179
Intracellular trafficking, secretion, and vesicular transport 162
Nucleotide transport and metabolism 109
Cell motility 102
Defense mechanisms 74
Cell cycle control, cell division, chromosome partitioning 38
Chromatin structure and dynamics 4
Extracellular structures 2
RNA processing and modification 1

Replicons

Name Length GC
Burkholderia cenocepacia J2315 chromosome 1, complete genome. 3870082 bp 66.7%
Replicon details
Burkholderia cenocepacia J2315 chromosome 2, complete genome. 3217062 bp 67.3%
Replicon details
Burkholderia cenocepacia J2315 chromosome 3, complete genome. 875977 bp 66.9%
Replicon details
Burkholderia cenocepacia J2315 pBCJ2315 plasmid, complete genome. 92661 bp 62.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF