Strain Overview | |
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Organism Name | Burkholderia pseudomallei 1710b |
Species | Burkholderia pseudomallei |
Strain | 1710b |
Description/Title | Sample from Burkholderia pseudomallei 1710b |
Annotated Genes | 6239 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name |
Geographic Location |
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Sample Provider | |
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Name | |
johnston@ncbi.nlm.nih.gov | |
Institution | NCBI |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bpseudomallei | 177 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
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Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02604036 |
NCBI Taxonomy ID | 320372 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Burkholderia pseudomallei 1710b chromosome I, complete sequence. | |
Burkholderia pseudomallei 1710b chromosome II, complete sequence. |
Feature | Count |
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gene | 6419 |
CDS | 6341 |
tRNA | 60 |
rRNA | 12 |
pseudo | 3 |
misc_RNA | 1 |
Localization | Count |
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Cytoplasmic | 3011 |
Cytoplasmic Membrane | 1216 |
Periplasmic | 185 |
Outer Membrane | 145 |
Extracellular | 154 |
Unknown | 1637 |
Unknown (This protein may have multiple localization sites) | 207 |
Flagellar | 28 |
Fimbrial | 9 |
Host Associated | 1 |
T3SS | 5 |
Feature | Count |
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General function prediction only | 515 |
Amino acid transport and metabolism | 469 |
Function unknown | 462 |
Transcription | 422 |
Cell wall/membrane/envelope biogenesis | 341 |
Energy production and conversion | 318 |
Carbohydrate transport and metabolism | 305 |
Inorganic ion transport and metabolism | 246 |
Signal transduction mechanisms | 240 |
Lipid transport and metabolism | 239 |
Secondary metabolites biosynthesis, transport and catabolism | 205 |
Coenzyme transport and metabolism | 198 |
Translation, ribosomal structure and biogenesis | 188 |
Intracellular trafficking, secretion, and vesicular transport | 181 |
Posttranslational modification, protein turnover, chaperones | 170 |
Replication, recombination and repair | 169 |
Cell motility | 130 |
Nucleotide transport and metabolism | 93 |
Defense mechanisms | 59 |
Cell cycle control, cell division, chromosome partitioning | 31 |
Chromatin structure and dynamics | 5 |
Extracellular structures | 2 |
RNA processing and modification | 1 |
Name | Length | GC | |
---|---|---|---|
Burkholderia pseudomallei 1710b chromosome I, complete sequence. | 4126292 bp | 67.6% |
Replicon details
|
Burkholderia pseudomallei 1710b chromosome II, complete sequence. | 3181762 bp | 68.5% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |