| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cenocepacia MC0-3 |
| Species | Burkholderia cenocepacia |
| Strain | MC0-3 |
| Description/Title | Sample from Burkholderia cenocepacia MC0-3 |
| Annotated Genes | 7071 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | United States:Michigan |
| Isolation Source | Rhizosphere, maize |
| Sample Provider | |
|---|---|
| Name | |
| johnston@ncbi.nlm.nih.gov | |
| Institution | NCBI |
| Date Collected | 2004 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 281 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02598404 |
| NCBI Taxonomy ID | 406425 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7176 |
| CDS | 6994 |
| tRNA | 67 |
| pseudo | 20 |
| rRNA | 18 |
| ncRNA | 2 |
| misc_RNA | 1 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3096 |
| Cytoplasmic Membrane | 1559 |
| Periplasmic | 233 |
| Outer Membrane | 171 |
| Extracellular | 92 |
| Unknown | 1945 |
| Unknown (This protein may have multiple localization sites) | 242 |
| Flagellar | 42 |
| Fimbrial | 7 |
| Host Associated | 1 |
| T3SS | 5 |
| Feature | Count |
|---|---|
| General function prediction only | 721 |
| Transcription | 709 |
| Amino acid transport and metabolism | 633 |
| Function unknown | 481 |
| Carbohydrate transport and metabolism | 432 |
| Cell wall/membrane/envelope biogenesis | 403 |
| Energy production and conversion | 401 |
| Signal transduction mechanisms | 313 |
| Lipid transport and metabolism | 310 |
| Inorganic ion transport and metabolism | 301 |
| Coenzyme transport and metabolism | 220 |
| Secondary metabolites biosynthesis, transport and catabolism | 217 |
| Replication, recombination and repair | 206 |
| Translation, ribosomal structure and biogenesis | 201 |
| Posttranslational modification, protein turnover, chaperones | 189 |
| Intracellular trafficking, secretion, and vesicular transport | 185 |
| Cell motility | 142 |
| Nucleotide transport and metabolism | 107 |
| Defense mechanisms | 70 |
| Cell cycle control, cell division, chromosome partitioning | 39 |
| Chromatin structure and dynamics | 3 |
| Extracellular structures | 3 |
| RNA processing and modification | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence. | 3532883 bp | 66.7% |
Replicon details
|
| Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence. | 3213911 bp | 66.6% |
Replicon details
|
| Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence. | 1224595 bp | 66.2% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |