| Strain Overview | |
|---|---|
| Organism Name | Burkholderia ambifaria MC40-6 |
| Species | Burkholderia ambifaria |
| Strain | MC40-6 |
| Description/Title | Sample from Burkholderia ambifaria MC40-6 |
| Annotated Genes | 6760 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location |
|---|
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 136 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02598385 |
| NCBI Taxonomy ID | 398577 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6794 |
| CDS | 6690 |
| pseudo | 106 |
| tRNA | 68 |
| rRNA | 18 |
| ncRNA | 3 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2931 |
| Cytoplasmic Membrane | 1431 |
| Periplasmic | 223 |
| Outer Membrane | 166 |
| Extracellular | 107 |
| Unknown | 2017 |
| Unknown (This protein may have multiple localization sites) | 198 |
| Flagellar | 21 |
| Fimbrial | 24 |
| Host Associated | 1 |
| T3SS | 4 |
| Feature | Count |
|---|---|
| General function prediction only | 674 |
| Transcription | 612 |
| Amino acid transport and metabolism | 574 |
| Function unknown | 527 |
| Energy production and conversion | 400 |
| Carbohydrate transport and metabolism | 398 |
| Cell wall/membrane/envelope biogenesis | 392 |
| Signal transduction mechanisms | 300 |
| Lipid transport and metabolism | 256 |
| Inorganic ion transport and metabolism | 247 |
| Coenzyme transport and metabolism | 210 |
| Secondary metabolites biosynthesis, transport and catabolism | 198 |
| Intracellular trafficking, secretion, and vesicular transport | 198 |
| Translation, ribosomal structure and biogenesis | 196 |
| Posttranslational modification, protein turnover, chaperones | 190 |
| Replication, recombination and repair | 167 |
| Cell motility | 139 |
| Nucleotide transport and metabolism | 94 |
| Defense mechanisms | 59 |
| Cell cycle control, cell division, chromosome partitioning | 40 |
| Chromatin structure and dynamics | 3 |
| RNA processing and modification | 1 |
| Extracellular structures | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia ambifaria MC40-6 chromosome 1, complete sequence. | 3443583 bp | 66.9% |
Replicon details
|
| Burkholderia ambifaria MC40-6 chromosome 2, complete sequence. | 2769414 bp | 66.5% |
Replicon details
|
| Burkholderia ambifaria MC40-6 chromosome 3, complete sequence. | 1127947 bp | 65.9% |
Replicon details
|
| Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence. | 301592 bp | 61.2% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |