Strain |
Burkholderia pseudomallei 1106a
GCF_000015925.1|latest |
Locus Tag |
BURPS1106A_A2071
|
NCBI Locus Tag | BURPS1106A_RS25760 |
Name |
bipD
Synonym: ipaD |
Replicon | chromosome II |
Genomic location | 2035136 - 2036068 (- strand) |
RefSeq | WP_004537374.1 |
GI | 126457493 |
Entrez | 4904266 |
GI | 126457493 |
INSDC | ABN94674.1 |
NCBI Locus Tag | BURPS1106A_RS25760 |
NCBI Old Locus Tag | BURPS1106A_A2071 |
RefSeq | WP_004537374.1 |
UniParc | UPI00005FAF90 |
UniProtKB Acc | A3P6Z4 |
UniProtKB ID | BIPD_BURP0 |
UniRef100 | UniRef100_A3P6Z4 |
UniRef50 | UniRef50_Q2T708 |
UniRef90 | UniRef90_A3MCH1 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
type III effector protein IpaD/SipD/SspD
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -8.03 |
Kyte-Doolittle Hydrophobicity Value | -0.379 |
Molecular Weight (kDa) | 34033.1 |
Isoelectric Point (pI) | 4.87 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
2IXR | TOXIN | 07/10/06 | BipD of Burkholderia Pseudomallei | BURKHOLDERIA PSEUDOMALLEI | 2.6 | X-RAY DIFFRACTION | 99.3 |
3NFT | TRANSPORT PROTEIN | 06/10/10 | Near-atomic resolution analysis of BipD- A component of the type-III secretion system of Burkholderia pseudomallei | BURKHOLDERIA PSEUDOMALLEI | 1.51 | X-RAY DIFFRACTION | 99.3 |
2J9T | TOXIN | 11/16/06 | BipD of Burkholderia Pseudomallei | BURKHOLDERIA PSEUDOMALLEI | 2.7 | X-RAY DIFFRACTION | 99.3 |
2IZP | TOXIN | 07/25/06 | BipD - an invasion protein associated with the type-III secretion system of Burkholderia pseudomallei. | BURKHOLDERIA PSEUDOMALLEI | 2.1 | X-RAY DIFFRACTION | 99.3 |
Source 1 | |
Database | VFDB : VF0428 |
Category | T3SS-3 |
Evidence |
ECO:0000250
sequence similarity evidence used in manual assertion
|
Host Organism | |
Notes | |
Annotation transferred from | Burkholderia pseudomallei K96243 |
Reference | 17984080 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 10 genera
|
Burkholderia Ortholog Group |
BG019830 (320 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: BURPS1106A_A2071
Search term: bipD
Search term: type III effector protein IpaD/SipD/SspD
|
Unraveling type III secretion systems in the highly versatile Burkholderia pseudomallei.
Sun GW, Gan YH
Trends Microbiol 2010 Dec;18(12):561-8
PubMed ID: 20951592
|
The type III secretion system needle tip complex mediates host cell sensing and translocon insertion.
Veenendaal AK, Hodgkinson JL, Schwarzer L, Stabat D, Zenk SF, Blocker AJ
Mol Microbiol 2007 Mar;63(6):1719-30
PubMed ID: 17367391
|