Strain Overview | |
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Organism Name | Burkholderia pseudomallei MSHR1328 |
Species | Burkholderia pseudomallei |
Strain | MSHR1328 |
Description/Title | Sample from Burkholderia pseudomallei MSHR1328 |
Annotated Genes | 5960 |
Partial Genes | 39 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Geographic Location | |
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Location Name | Australia |
Isolation Source | sputum |
Sample Provider | |
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Name | |
Institution | Los Alamos National Laboratory, Genome Science |
Date Collected | 2001 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | bpseudomallei | 259 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 5 |
Contig N50 | 1947855 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03455786 |
NCBI Taxonomy ID | 1249469 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Burkholderia pseudomallei MSHR1328 chromosome I, whole genome shotgun sequence. | |
Burkholderia pseudomallei MSHR1328 chromosome II, whole genome shotgun sequence. |
Feature | Count |
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gene | 5960 |
CDS | 5887 |
pseudo | 142 |
tRNA | 60 |
rRNA | 12 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2471 |
Cytoplasmic Membrane | 1206 |
Periplasmic | 203 |
Outer Membrane | 137 |
Extracellular | 97 |
Unknown | 1651 |
Unknown (This protein may have multiple localization sites) | 164 |
Flagellar | 32 |
Fimbrial | 6 |
Host Associated | 1 |
T3SS | 3 |
Name | Length | GC | |
---|---|---|---|
Burkholderia pseudomallei MSHR1328 chromosome I, whole genome shotgun sequence. | 3975521 bp | 67.9% |
Replicon details
|
Burkholderia pseudomallei MSHR1328 chromosome II, whole genome shotgun sequence. | 3178967 bp | 68.4% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |