Strain Overview | |
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Organism Name | Burkholderia lata LK27 |
Species | Burkholderia lata |
Strain | LK27 |
Description/Title | Microbe sample from Burkholderia lata |
Annotated Genes | 6260 |
Partial Genes | 157 |
Host Information |
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Geographic Location | |
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Location Name | Malaysia: Malacca |
Isolation Source | Plant |
Sample Provider | |
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Name | Xin Yue Chan |
xinyuechan@gmail.com | |
Institution | University of Malaya |
Date Collected | 06-Jul-2010 |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 166 |
Contig N50 | 114090 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03751786 |
NCBI Taxonomy ID | 482957 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6260 |
CDS | 6193 |
pseudo | 144 |
tRNA | 59 |
rRNA | 6 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2706 |
Cytoplasmic Membrane | 1367 |
Periplasmic | 228 |
Outer Membrane | 147 |
Extracellular | 82 |
Unknown | 1474 |
Unknown (This protein may have multiple localization sites) | 195 |
Flagellar | 7 |
Fimbrial | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |