Burkholderia cepacia MSMB1513WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1513WGS
Species Burkholderia cepacia
Strain MSMB1513WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7534
Partial Genes 127
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1609
gltB
696		 atpD
525		 lepA
648		 gyrB
1032		 phaC
101		 trpB
634		 recA
373
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001530415.1
Assembly Status latest
Scaffolds
Contigs 88
Contig N50 265747
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449496
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7534
CDS 7464
pseudo 121
tRNA 60
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3209
Cytoplasmic Membrane 1646
Periplasmic 240
Outer Membrane 188
Extracellular 105
Unknown 1862
Unknown (This protein may have multiple localization sites) 220
Flagellar 11
Fimbrial 8

Replicons

88 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF