Burkholderia cepacia MSMB1831WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1831WGS
Species Burkholderia cepacia
Strain MSMB1831WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7633
Partial Genes 124
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1619
gyrB
1057		 atpD
235		 gltB
708		 phaC
3		 trpB
21		 recA
598		 lepA
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001526755.1
Assembly Status latest
Scaffolds
Contigs 81
Contig N50 301140
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449379
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7633
CDS 7564
pseudo 137
tRNA 60
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3261
Cytoplasmic Membrane 1630
Periplasmic 247
Outer Membrane 188
Extracellular 95
Unknown 1918
Unknown (This protein may have multiple localization sites) 231
Flagellar 10
Fimbrial 7

Replicons

81 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF