Burkholderia cepacia INT3-BP144

Strain Overview
Organism Name Burkholderia cepacia INT3-BP144
Species Burkholderia cepacia
Strain INT3-BP144
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7542
Partial Genes 163
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1613
lepA
649		 phaC
3		 recA
593		 trpB
21		 atpD
1		 gltB
386		 gyrB
1037
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001525765.1
Assembly Status latest
Scaffolds
Contigs 123
Contig N50 275768
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449175
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7542
CDS 7476
pseudo 168
tRNA 59
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3219
Cytoplasmic Membrane 1650
Periplasmic 250
Outer Membrane 186
Extracellular 98
Unknown 1852
Unknown (This protein may have multiple localization sites) 228
Flagellar 9
Fimbrial 5
T3SS 2

Replicons

123 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF