Strain Overview | |
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Organism Name | Burkholderia cepacia INT3-BP108 |
Species | Burkholderia cepacia |
Strain | INT3-BP108 |
Description/Title | Pathogen: environmental/food/other sample from Burkholderia cepacia |
Annotated Genes | 7529 |
Partial Genes | 170 |
Host Information | |
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Host Species Taxonomic Name | unknown |
Geographic Location | |
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Location Name | Thailand: Ubon |
Isolation Source | soil |
Latitude/Longitude | 15.42 N 104.95 E |
Sample Provider | |
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Name | Jason Sahl |
jasonsahl@gmail.com | |
Institution | Northern Arizona University |
Date Collected | 2007 |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | bcc | 1613 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 134 |
Contig N50 | 291182 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03449167 |
NCBI Taxonomy ID | 292 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7529 |
CDS | 7461 |
pseudo | 173 |
tRNA | 61 |
ncRNA | 3 |
rRNA | 3 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 3219 |
Cytoplasmic Membrane | 1651 |
Periplasmic | 251 |
Outer Membrane | 186 |
Extracellular | 99 |
Unknown | 1835 |
Unknown (This protein may have multiple localization sites) | 227 |
Flagellar | 9 |
Fimbrial | 5 |
T3SS | 2 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |