Strain Overview | |
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Organism Name | Burkholderia gladioli BSR3 |
Species | Burkholderia gladioli |
Strain | BSR3 |
Description/Title | Sample from Burkholderia gladioli BSR3 |
Annotated Genes | 7726 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name | Oryza sativa |
Host Species Common Name | rice |
Host Species Taxonomy ID | 4530 |
Geographic Location | |
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Location Name | South Korea |
Isolation Source | diseased rice sheath |
Sample Provider | |
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Name | |
johnston@ncbi.nlm.nih.gov | |
Institution | NCBI |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Gapless Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02603164 |
NCBI Taxonomy ID | 999541 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7757 |
CDS | 7399 |
tRNA | 68 |
pseudo | 34 |
rRNA | 15 |
Localization | Count |
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Cytoplasmic | 3258 |
Cytoplasmic Membrane | 1523 |
Periplasmic | 206 |
Outer Membrane | 189 |
Extracellular | 108 |
Unknown | 1867 |
Unknown (This protein may have multiple localization sites) | 247 |
Flagellar | 17 |
Fimbrial | 8 |
Host Associated | 1 |
T3SS | 2 |
Feature | Count |
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General function prediction only | 796 |
Transcription | 716 |
Amino acid transport and metabolism | 594 |
Function unknown | 472 |
Carbohydrate transport and metabolism | 447 |
Cell wall/membrane/envelope biogenesis | 439 |
Energy production and conversion | 385 |
Signal transduction mechanisms | 324 |
Lipid transport and metabolism | 285 |
Inorganic ion transport and metabolism | 280 |
Replication, recombination and repair | 267 |
Secondary metabolites biosynthesis, transport and catabolism | 228 |
Coenzyme transport and metabolism | 217 |
Intracellular trafficking, secretion, and vesicular transport | 207 |
Posttranslational modification, protein turnover, chaperones | 203 |
Translation, ribosomal structure and biogenesis | 200 |
Cell motility | 148 |
Nucleotide transport and metabolism | 108 |
Defense mechanisms | 71 |
Cell cycle control, cell division, chromosome partitioning | 46 |
Chromatin structure and dynamics | 3 |
RNA processing and modification | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |