| Strain Overview | |
|---|---|
| Organism Name | Burkholderia pseudomallei 1106a |
| Species | Burkholderia pseudomallei |
| Strain | 1106a |
| Description/Title | Sample from Burkholderia pseudomallei 1106a |
| Annotated Genes | 6031 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| johnston@ncbi.nlm.nih.gov | |
| Institution | NCBI |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bpseudomallei | 70 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02604046 |
| NCBI Taxonomy ID | 357348 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia pseudomallei 1106a chromosome I, complete sequence. | |
| Burkholderia pseudomallei 1106a chromosome II, complete sequence. |
| Feature | Count |
|---|---|
| gene | 7255 |
| CDS | 7170 |
| tRNA | 59 |
| rRNA | 12 |
| pseudo | 4 |
| misc_RNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2497 |
| Cytoplasmic Membrane | 1198 |
| Periplasmic | 192 |
| Outer Membrane | 142 |
| Extracellular | 105 |
| Unknown | 2983 |
| Unknown (This protein may have multiple localization sites) | 175 |
| Flagellar | 24 |
| Fimbrial | 8 |
| Host Associated | 1 |
| T3SS | 5 |
| Feature | Count |
|---|---|
| General function prediction only | 512 |
| Amino acid transport and metabolism | 471 |
| Function unknown | 463 |
| Transcription | 427 |
| Cell wall/membrane/envelope biogenesis | 336 |
| Energy production and conversion | 313 |
| Carbohydrate transport and metabolism | 298 |
| Inorganic ion transport and metabolism | 254 |
| Signal transduction mechanisms | 243 |
| Lipid transport and metabolism | 242 |
| Secondary metabolites biosynthesis, transport and catabolism | 203 |
| Coenzyme transport and metabolism | 196 |
| Translation, ribosomal structure and biogenesis | 188 |
| Intracellular trafficking, secretion, and vesicular transport | 178 |
| Posttranslational modification, protein turnover, chaperones | 167 |
| Replication, recombination and repair | 161 |
| Cell motility | 129 |
| Nucleotide transport and metabolism | 93 |
| Defense mechanisms | 61 |
| Cell cycle control, cell division, chromosome partitioning | 32 |
| Chromatin structure and dynamics | 5 |
| Extracellular structures | 3 |
| RNA processing and modification | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia pseudomallei 1106a chromosome I, complete sequence. | 3988455 bp | 68.0% |
Replicon details
|
| Burkholderia pseudomallei 1106a chromosome II, complete sequence. | 3100794 bp | 68.6% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |