| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cenocepacia HI2424 |
| Species | Burkholderia cenocepacia |
| Strain | B1 |
| Description/Title | Generic sample from Burkholderia cenocepacia HI2424 |
| Annotated Genes | 6812 |
| Partial Genes | 24 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Isolation Source | onion field soil isolate |
| Environmental Material (?) | soil |
| Sample Provider | |
|---|---|
| Name | |
| Institution | Joint Genome Institute, U.S. Department of Energy |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 122 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN00113327 |
| NCBI Taxonomy ID | 331272 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6812 |
| CDS | 6722 |
| tRNA | 68 |
| pseudo | 36 |
| rRNA | 18 |
| misc_RNA | 2 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2999 |
| Cytoplasmic Membrane | 1460 |
| Periplasmic | 222 |
| Outer Membrane | 161 |
| Extracellular | 81 |
| Unknown | 1625 |
| Unknown (This protein may have multiple localization sites) | 216 |
| Flagellar | 22 |
| Fimbrial | 2 |
| T3SS | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. | 3483902 bp | 66.8% |
Replicon details
|
| Burkholderia cenocepacia HI2424 chromosome 2, complete sequence. | 2998664 bp | 66.9% |
Replicon details
|
| Burkholderia cenocepacia HI2424 chromosome 3, complete sequence. | 1055417 bp | 67.3% |
Replicon details
|
| Burkholderia cenocepacia HI2424 plasmid 1, complete sequence. | 164857 bp | 61.8% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |