Motif View

Internal ID 1761239
Source Database TransTermHP TERM 984
Feature Type terminator
Name
Rho-independent transcription terminator TERM 984
Sequence GCCCCGCCGGCGCAAACCGGCGGGGC
Look for more occurrences
Start 3109892
End 3109917
Strand +
Genomic Context
Replicon Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTTCACGATAAAAAA(5' tail) GCCCCGCCGG(5' stem) CGCAAA(loop) CCGGCGGGGC(3' stem) TTTCACGCATGCAAC(3' tail). Confidence: 100. opp_overlap 3109892, overlap 3109914

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685