Motif View

Internal ID 1761202
Source Database TransTermHP TERM 939
Feature Type terminator
Name
Rho-independent transcription terminator TERM 939
Sequence GGGCCGAGCAATTGCTTGGCCC
Look for more occurrences
Start 3006668
End 3006689
Strand -
Genomic Context
Replicon Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCAAAAAACAAAAA(5' tail) GGGCCAAGC(5' stem) AATT(loop) GCTCGGCCC(3' stem) CTTTCAGATCCTGCT(3' tail). Confidence: 100. opp_overlap 3006667 3006668

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685