Motif View

Internal ID 1761110
Source Database TransTermHP TERM 823
Feature Type terminator
Name
Rho-independent transcription terminator TERM 823
Sequence CCGGAGCAAAAGCTCCGG
Look for more occurrences
Start 2685098
End 2685115
Strand +
Genomic Context
Replicon Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTGCCGCATCAAGAA(5' tail) CCGGAGC(5' stem) AAAA(loop) GCTCCGG(3' stem) TTTTTTTTCGTCCGG(3' tail). Confidence: 100. opp_overlap 2685098

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685