Motif View

Internal ID 1760172
Source Database TransTermHP TERM 59
Feature Type terminator
Name
Rho-independent transcription terminator TERM 59
Sequence CGGGCCGCTCTGTCGAGCGGCCCG
Look for more occurrences
Start 150942
End 150965
Strand -
Genomic Context
Replicon Burkholderia ambifaria AMMD chromosome 2, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGCCGACATGACAA(5' tail) CGGGCCGCTC(5' stem) GACA(loop) GAGCGGCCCG(3' stem) TTGTCTTTTGTCCGG(3' tail). Confidence: 100. opp_overlap 150937, overlap 150939

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685