Motif View

Internal ID 1751184
Source Database TransTermHP TERM 528
Feature Type terminator
Name
Rho-independent transcription terminator TERM 528
Sequence CGCGCGGGCGTCGTGGCACACGACGGCCCGCGCG
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Start 2602991
End 2603024
Strand +
Genomic Context
Replicon Burkholderia sp. 383, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAAAGACGGAACTTC(5' tail) CGCGCGGG-CGTCGTG(5' stem) GCA(loop) CACGACGGCCCGCGCG(3' stem) TTTCAGCGGGCCGGC(3' tail). Confidence: 100. gap 1, opp_overlap 2602982 2602987 2602980 2603014

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685