Motif View

Internal ID 1585825
Source Database TransTermHP TERM 101
Feature Type terminator
Name
Rho-independent transcription terminator TERM 101
Sequence CCCGCGGCATGCCGCGGG
Look for more occurrences
Start 302459
End 302476
Strand +
Genomic Context
Replicon Burkholderia cenocepacia K56-2Valvano ctg7180000002940C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGTTGCGACGGCTT(5' tail) CCCGCGG(5' stem) CATG(loop) CCGCGGG(3' stem) TTTTTTGCGTGGGGC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685