Burkholderia glumae ATCC 33617, KS03_RS20605 (ntpR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Burkholderia glumae LMG 2196 = ATCC 33617
GCF_000960995.1|latest |
| Locus Tag |
KS03_RS20605
|
| NCBI Old Locus Tag | KS03_1625 |
| Name |
ntpR
Synonym: negative regulator of toxoflavin production LysR |
| Replicon | chromosome I |
| Genomic location | 1770301 - 1771275 (- strand) |
Cross-References
| RefSeq | WP_012734779.1 |
| GI | 502215297 |
| NCBI Locus Tag | KS03_RS20605 |
| NCBI Old Locus Tag | KS03_1625 |
| RefSeq | WP_012734779.1 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
NtpR
|
| Synonyms |
LysR family transcriptional regulator |
| Evidence for Translation | |
| Charge (pH 7) | 1.06 |
| Kyte-Doolittle Hydrophobicity Value | -0.052 |
| Molecular Weight (kDa) | 35702.2 |
| Isoelectric Point (pI) | 7.21 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Burkholderia Ortholog Group |
BG000688 (636 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: KS03_RS20605
Search term: ntpR
Search term: NtpR
|
Human Homologs
References
|
Identification of new regulatory genes involved in the pathogenic functions of the rice-pathogenic bacterium Burkholderia glumae.
Melanson RA, Barphagha I, Osti S, Lelis TP, Karki HS, Chen R, Shrestha BK, Ham JH
Microbiology 2017 Feb;163(2):266-279
PubMed ID: 28036242
|