Burkholderia pseudomallei K96243, BPSL3103 (tssF-1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
Locus Tag
BPSL3103
Name
tssF-1
Replicon chromosome 1
Genomic location 3708183 - 3710009 (- strand)
CommentGene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185)

Cross-References

RefSeq YP_109698.1
GI 53720712
Entrez 3092705
GI 53720712
INSDC CAH37114.1
NCBI Locus Tag BPSL3103
RefSeq YP_109698.1,GeneID
UniParc UPI000043B619
UniProtKB Acc Q63QC0
UniProtKB ID Q63QC0_BURPS
UniRef100 UniRef100_A0A069BBL3
UniRef50 UniRef50_C4AZ32
UniRef90 UniRef90_C4AZ32

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion system protein TssF-1
Product Name Confidence: Class 2
Synonyms hypothetical protein
Evidence for Translation
Detected in B. pseudomallei strain DD503 using trypsin shaving and mass spectrometry (PMID:21391724).
Charge (pH 7) -0.47
Kyte-Doolittle Hydrophobicity Value -0.115
Molecular Weight (kDa) 67886.5
Isoelectric Point (pI) 6.96

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization
Detected in Triton-insoluble fraction of lysozyme-treated B. pseudomallei DD503 cells using trypsin shaving and mass spectrometry (PMID:21391724).

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 104 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG000370 (654 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSL3103
Search term: tssF-1

References

In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS.
Microbiology. 2007 Aug;153(Pt 8):2689-99.
PubMed ID: 17660433
PubMed ID: 22007185
Type VI secretion is a major virulence determinant in Burkholderia mallei.
Schell MA(1), Ulrich RL, Ribot WJ, Brueggemann EE, Hines HB, Chen D, Lipscomb L, Kim HS, Mrázek J, Nierman WC, Deshazer D.
Mol Microbiol. 2007 Jun;64(6):1466-85.
PubMed ID: 17555434