| Apr 30, 2018 |
BCAL0909
|
Burkholderia cenocepacia
J2315 |
New gene name: ybeY. New product name: rRNA maturation RNAse YbeY. New product name confidence: Class 2. New PubMed ID: 20807199. New PubMed ID: 23638028. New PubMed ID: 19181801. New comment: .Annotation transferred from: UniprotKB:P0A898.
|
Bart Devreese. Ghent University, Belgium
|
| Apr 30, 2018 |
WQ49_RS13910
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaA. New product name: PaaA. New product name confidence: Class 1. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment: Putative monooxygenase subunit of ring 1,2-phenylacetyl-CoA epoxidase
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS13905
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaB. New product name: PaaB. New product name synonym: putative subunit PaaB of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 16997993. New comment:
. Annotation transferred from: UniProtKB:P76078.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS05095
|
Burkholderia cenocepacia
K56-2Valvano |
New product name synonym: putative subunit PaaB of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 16997993. New comment:
. Annotation transferred from: UniProtKB:P76078.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS13900
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaC. New product name: PaaC. New product name synonym: putative subunit PaaC, structural subunit, of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 21247899. New comment:
. Annotation transferred from: UniProtKB:P76079.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS05100
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaC. New product name: PaaC. New product name synonym: putative subunit PaaC, structural subunit, of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 21247899. New comment:
. Annotation transferred from: UniProtKB:P76079.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS13890
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaE. New product name: PaaE. New product name synonym: putative reductase subunit of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment:
. Annotation transferred from: UniProtKB:P76081.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS11495
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaF. New product name: PaaF. New product name synonym: putative 2,3-dehydroadipyl-CoA hydratase. New product name confidence: Class 2. New PubMed ID: 18776009. New PubMed ID: 20660314. New comment:
. Annotation transferred from: UniProtKB:P76082.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS11510
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment:
. Annotation transferred from: UniProtKB:P77467.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS28550
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment:
. Annotation transferred from: UniProtKB:P77467.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS04260
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaH. New product name: PaaH. New product name synonym: putative 3-hydroxyadipyl-CoA dehydrogenase. New product name confidence: Class 2. New PubMed ID: 20660314. New PubMed ID: 12846838. New comment:
. Annotation transferred from: UniProtKB:P76083.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS11895
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaH. New product name: PaaH. New product name synonym: putative 3-hydroxyadipyl-CoA dehydrogenase. New product name confidence: Class 2. New PubMed ID: 20660314. New PubMed ID: 12846838. New comment:
. Annotation transferred from: UniProtKB:P76083.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS11505
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment:
. Annotation transferred from: UniProtKB:P0C7L2.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS28555
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment:
. Annotation transferred from: UniProtKB:P0C7L2.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS11520
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment:
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS28540
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment:
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BCAL0404
|
Burkholderia cenocepacia
J2315 |
New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment:
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS04255
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment:
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS11890
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment:
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BCAM1711
|
Burkholderia cenocepacia
J2315 |
New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment:
.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS11515
|
Burkholderia cenocepacia
K56-2 |
New gene name: paaI. New product name: PaaI. New product name synonym: putative phenylacetatyl-CoA thioesterase. New product name confidence: Class 2. New PubMed ID: 16464851. New comment:
. Annotation transferred from: UniProtKB:P76084.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS09445
|
Burkholderia cenocepacia
K56-2 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS32320
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BCAS0364
|
Burkholderia cenocepacia
J2315 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
WQ49_RS11500
|
Burkholderia cenocepacia
K56-2 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS28560
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BCAL0408
|
Burkholderia cenocepacia
J2315 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 22, 2009 |
BCAM0188
|
Burkholderia cenocepacia
J2315 |
New gene name: cepR2. New product name: CepR2. New product name confidence: Class 1. New evidence reference (PMID): 19201791.
|
Eoin O'Grady, University of Calgary Health Sciences Centre, Calgary, Alberta
|
| Jan 14, 2010 |
BCAS0225
|
Burkholderia cenocepacia
J2315 |
New gene name: shvR. New product name: shiny variant regulator, ShvR. New product name confidence: Class 1. New evidence reference (PMID): 19761612.
|
Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
|
| Jan 14, 2010 |
BCAS0223
|
Burkholderia cenocepacia
J2315 |
New gene name: afcC. New product name: AfcC. New product name confidence: Class 2. New evidence reference (PMID): 9758823.
|
Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
|
| Apr 30, 2018 |
AK34_RS09175
|
Burkholderia dolosa
AU0158 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
BP1026B_I0260
|
Burkholderia pseudomallei
1026b |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
BPSL3041
|
Burkholderia pseudomallei
K96243 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
I35_RS02045
|
Burkholderia cenocepacia
H111 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
BMAA0543
|
Burkholderia mallei
ATCC 23344 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
BCEP18194_RS08230
|
Burkholderia lata
383 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
BTH_I2900
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
BMAA0543
|
Burkholderia mallei
ATCC 23344 |
New PubMed ID: 21296885. New PubMed ID: 18776009. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
bglu_1g04490
|
Burkholderia glumae
BGR1 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
AK34_RS25965
|
Burkholderia dolosa
AU0158 |
New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.. Annotation transferred from: UniProtKB:Q5P3J4.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Jan 25, 2011 |
BCAM2107
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 17371508.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BPSL2865
|
Burkholderia pseudomallei
K96243 |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 12832453.
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Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS668_3322
|
Burkholderia pseudomallei
668 |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 12832453.
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Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1710b_3366
|
Burkholderia pseudomallei
1710b |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 12832453.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1106A_3356
|
Burkholderia pseudomallei
1106a |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 12832453.
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Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2643
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New EC Number: 1.15.1.1. New GO Accession: GO:0004784(IDA). New PubMed reference: 17325048.
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Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2829
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New EC Number: 3.4.21.107. New PubMed reference: 17220310.
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Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM2165
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New GO Accession: GO:0008800(ISS). New PubMed reference: 19075063. New PubMed reference: 9371340. New PubMed reference: 18931103.
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Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM0393
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 9333046. New PubMed reference: 18931103.
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Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM1779
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 12821450. New PubMed reference: 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAS0156
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 14982755. New PubMed reference: 18931103.
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Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bxe_A1420
|
Burkholderia xenovorans
LB400 |
New product name confidence: Class 2. New comment : Expressed as a hexa-histidine-tagged fusion in Escherichia coli BL21 Star (DE3). ALDHC in complex with NADPH bound in the cofactor binding pocket and an ordered fragment of a polyethylene glycol molecule bound in the substrate tunnel, to 1.6 A resolution. Belongs to space group P1. The ALDHC monomer comprises three distinct domains, an N-terminal cofactor (NAD/P+)-binding domain, a catalytic domain, and an oligomerization domain. New EC Number: 1.2.1.5. New GO Accession: GO:0004030(IDA). New PubMed reference: 18462753.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bxe_A1420
|
Burkholderia xenovorans
LB400 |
New comment : ALDHC is preferentially active towards linear medium-chain to long-chain aldehydes as compared to branched-chain, short-chain or aromatic aldehydes. Reorientation of an extended loop (Asn478-Pro490) is responsible for the constricted structure of the substrate tunnel, with the side chain of Asn478 imposing steric restrictions on branched-chain and aromatic aldehydes. A key glycine (Gly104) positioned at the mouth of the tunnel allows for maximum tunnel depth required to bind the linear medium to long aliphatic chain of the native substrate.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM2107
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 17371508.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BPSL2865
|
Burkholderia pseudomallei
K96243 |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 12832453.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS668_3322
|
Burkholderia pseudomallei
668 |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 12832453.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1710b_3366
|
Burkholderia pseudomallei
1710b |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 12832453.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BURPS1106A_3356
|
Burkholderia pseudomallei
1106a |
New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 12832453.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2643
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New EC Number: 1.15.1.1. New GO accession: GO:0004784 [IDA]. New evidence reference (PMID): 17325048.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL2829
|
Burkholderia cenocepacia
J2315 |
New subcellular localization: Periplasmic. New subcellular localization confidence: Class 1. New EC Number: 3.4.21.107.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM2165
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 19075063. New evidence reference (PMID): 9371340. New evidence reference (PMID): 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM0393
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 9333046. New evidence reference (PMID): 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM1779
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 12821450. New evidence reference (PMID): 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAS0156
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 14982755. New evidence reference (PMID): 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
Bxe_A1420
|
Burkholderia xenovorans
LB400 |
New product name confidence: Class 2. New EC Number: 1.2.1.5. New GO accession: GO:0004030 [IDA]. New evidence reference (PMID): 18462753.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 22, 2009 |
Bxe_A0793
|
Burkholderia xenovorans
LB400 |
New gene name: fusA. New product name confidence: Class 1. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847.
|
Literature review. Geoffrey L. Winsor, Simon Fraser University
|
| Apr 22, 2009 |
BCAM0857
|
Burkholderia cenocepacia
J2315 |
New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 90% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
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Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM0859
|
Burkholderia cenocepacia
J2315 |
New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 92% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM1870
|
Burkholderia cenocepacia
J2315 |
New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New homology: 100% identity to CepI[B. cepacia K56-2] [accession number AF019654]. New evidence reference (PMID): 11402012.
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Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM1868
|
Burkholderia cenocepacia
J2315 |
New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 99% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
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Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL0998
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfA1. New product name: EcfA1. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
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Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL2872
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfA2. New product name: EcfA2. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
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Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL3478
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
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Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL1369
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
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Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL2360
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
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Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL2462
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfE. New product name: sigma factor 70 EcfE. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL3151
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfF. New product name: sigma factor 70 EcfF. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL1947
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfG. New product name: sigma factor 70 EcfG. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM1661
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfH. New product name: sigma factor 70 EcfH. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL1688
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New evidence reference (PMID): 17784978.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM0001
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfJ. New product name: sigma factor 70 EcfJ. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM2748
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM0849
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL3486
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL2739
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM0004
|
Burkholderia cenocepacia
J2315 |
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. cencoepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM0005
|
Burkholderia cenocepacia
J2315 |
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM0918
|
Burkholderia cenocepacia
J2315 |
New gene name: sigE. New product name: sigma factor 70 sigE. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM2371
|
Burkholderia cenocepacia
J2315 |
New gene name: sigI. New product name: sigma factor 70 sigI. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM1259
|
Burkholderia cenocepacia
J2315 |
New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL0144
|
Burkholderia cenocepacia
J2315 |
New gene name: sigK. New product name: sigma factor 70 SigK. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL1892
|
Burkholderia cenocepacia
J2315 |
New gene name: sigL. New product name: sigma factor 70 SigL. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL0787
|
Burkholderia cenocepacia
J2315 |
New gene name: sigM. New product name: sigma factor 70 SigM. New product name confidence: Class 2. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL3119
|
Burkholderia cenocepacia
J2315 |
New product name: WbiI. New product name confidence: Class 2. New homology: 67.8% identity to whpM[P. aeruginosa PAO1]. New homology: 99% identity to WbiI[accession number AY523838]. New evidence reference (PMID): 15364998.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAM2307
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference (PMID): 16790782.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Sep 15, 2008 |
Bcen_0051
|
|
New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 86% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_0060
|
|
New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 90% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_0408
|
|
New gene name: wbiI. New homology: 100% identity to wbiI[accession number AY523838]. New evidence reference (PMID): 15364998.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_0647
|
|
New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 90% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
| Sep 15, 2008 |
Bcen_0877
|
|
New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New homology: 94% identity to ecfC[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|