Jan 25, 2011 |
Bcen_4847
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4847
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4848
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4848
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4849
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4849
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4850
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4850
|
|
New comment : Contains frameshift mutation in J2315.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4850
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4851
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4851
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4852
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4852
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4853
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4853
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4854
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcen_4854
|
|
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Sep 15, 2008 |
Bcen_4887
|
|
New gene name: pehA. New product name: pectic hydrolase enzyme A, PehA. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New homology: 84% identity to PehA [Burkholderia cepacia ATCC 25416]. New evidence reference (PMID): 17493828. New evidence reference (PMID): 17627609.
|
Literature review. Massa, C. Structural Biology Laboratory, Trieste, Italy
|
Aug 1, 2008 |
Bcen_4887
|
|
New homology: 100% identity to PehA [Burkholderia cepacia ATCC 25416]. New evidence reference (PMID): 17493828. New evidence reference (PMID): 17627609.
|
Literature review. Massa, C. Structural Biology Laboratory, Trieste, Italy
|
Aug 25, 2008 |
Bcen_4906
|
|
New gene name: tftC. New product name confidence: Class 2. New alternate product name: TftC. New homology: 42% identity to TftC [B. cepacia AC1100]. New evidence reference (PMID): 12700257.
|
Literature Review. Xun, L. Washington State University, Pullman, Washington
|
Sep 15, 2008 |
Bcen_5164
|
|
New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New evidence reference (PMID): 18328098.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
|
Sep 15, 2008 |
Bcen_5165
|
|
New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432.
|
Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
|
Sep 15, 2008 |
Bcen_5259
|
|
New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 94% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Aug 25, 2008 |
Bcen_5510
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
Sep 15, 2008 |
Bcen_5637
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
Sep 15, 2008 |
Bcen_5637
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
Sep 15, 2008 |
Bcen_6259
|
|
New homology: 85% identity to sigL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep1808_0231
|
Burkholderia vietnamiensis
G4 |
New homology: 95% identity ot SigK[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep1808_0303
|
Burkholderia vietnamiensis
G4 |
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 96% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep1808_0749
|
Burkholderia vietnamiensis
G4 |
New gene name: caiA. New product name confidence: Class 2. New homology: 94% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Aug 25, 2008 |
Bcep1808_0897
|
Burkholderia vietnamiensis
G4 |
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 89% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
Sep 15, 2008 |
Bcep1808_1046
|
Burkholderia vietnamiensis
G4 |
New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 89% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep1808_2350
|
Burkholderia vietnamiensis
G4 |
New gene name: ecfD. New product name: sigma factor 70 EcfD. New product name confidence: Class 1. New homology: 96% identity to ecfD[B. cenocepacia J2315]. New evidence reference (PMID): 1774948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep1808_2559
|
Burkholderia vietnamiensis
G4 |
New gene name: cysB. New product name: transcription factor CysB. New product name confidence: Class 1. New homology: 99% identity to CysB [ B. cepacia IST408]. New evidence reference (PMID): 16997956.
|
Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
|
Sep 15, 2008 |
Bcep1808_2605
|
Burkholderia vietnamiensis
G4 |
New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep1808_2728
|
Burkholderia vietnamiensis
G4 |
New gene name: coxG. New product name confidence: Class 2. New homology: 68% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Sep 15, 2008 |
Bcep1808_2731
|
Burkholderia vietnamiensis
G4 |
New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
|
Aug 25, 2008 |
Bcep1808_2766
|
Burkholderia vietnamiensis
G4 |
New gene name: deh4p. New product name: putative haloacid permease, Deh4p . New product name confidence: Class 2. New homology: 79% identity to putative haloacid permease, Deh4p [B. cepacia MBA4]. New evidence reference (PMID): 17545323.
|
Literature Review. Tsang, Jimmy S. H. The University of Hong Kong
|
Sep 15, 2008 |
Bcep1808_2896
|
Burkholderia vietnamiensis
G4 |
New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep1808_4001
|
Burkholderia vietnamiensis
G4 |
New gene name: bviI. New product name: acyl-homoserine lactone synthase BviI. New product name confidence: Class 1. New evidence reference (PMID): 17277056.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Apr 10, 2015 |
Bcep1808_4200
|
Burkholderia vietnamiensis
G4 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4201
|
Burkholderia vietnamiensis
G4 |
New gene name: bceB. New product name: BceB. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4202
|
Burkholderia vietnamiensis
G4 |
New gene name: bceC. New product name: BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Sep 15, 2008 |
Bcep1808_4203
|
Burkholderia vietnamiensis
G4 |
New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Apr 10, 2015 |
Bcep1808_4203
|
Burkholderia vietnamiensis
G4 |
New product name: BceD. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4204
|
Burkholderia vietnamiensis
G4 |
New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Sep 15, 2008 |
Bcep1808_4205
|
Burkholderia vietnamiensis
G4 |
New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
Apr 10, 2015 |
Bcep1808_4205
|
Burkholderia vietnamiensis
G4 |
New product name: BceF. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4206
|
Burkholderia vietnamiensis
G4 |
New gene name: bceG. New product name: BceG. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4207
|
Burkholderia vietnamiensis
G4 |
New gene name: bceH. New product name: BceH. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4208
|
Burkholderia vietnamiensis
G4 |
New gene name: bceI. New product name: BceI. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4209
|
Burkholderia vietnamiensis
G4 |
New gene name: bceJ. New product name: BceJ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4210
|
Burkholderia vietnamiensis
G4 |
New gene name: bceK. New product name: BceK. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4471
|
Burkholderia vietnamiensis
G4 |
New gene name: bceM. New product name: BceM. New gene name synonym: `. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4472
|
Burkholderia vietnamiensis
G4 |
New gene name: bceN. New product name: BceN. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4473
|
Burkholderia vietnamiensis
G4 |
New gene name: bceO. New product name: BceO. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4474
|
Burkholderia vietnamiensis
G4 |
New gene name: bceP. New product name: BceP. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4475
|
Burkholderia vietnamiensis
G4 |
New gene name: bceQ. New product name: BceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4476
|
Burkholderia vietnamiensis
G4 |
New gene name: bceR. New product name: BceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4477
|
Burkholderia vietnamiensis
G4 |
New gene name: bceS. New product name: BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4479
|
Burkholderia vietnamiensis
G4 |
New gene name: bceT. New product name: BceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
Bcep1808_4480
|
Burkholderia vietnamiensis
G4 |
New gene name: bceU. New product name: BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-II gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Sep 15, 2008 |
Bcep1808_5259
|
Burkholderia vietnamiensis
G4 |
New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep1808_5260
|
Burkholderia vietnamiensis
G4 |
New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 94% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep1808_5262
|
Burkholderia vietnamiensis
G4 |
New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New evidence reference (PMID): 17277056.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Aug 25, 2008 |
Bcep1808_5413
|
Burkholderia vietnamiensis
G4 |
New gene name: tftC. New product name confidence: Class 2. New alternate product name: TftC. New homology: 42% identity to TftC [B. cepacia AC1100]. New evidence reference (PMID): 12700257.
|
Literature Review. Xun, L. Washington State University, Pullman, Washington
|
Jan 25, 2011 |
Bcep1808_5782
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5782
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5783
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5783
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5784
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5784
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5785
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5785
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5786
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5786
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5787
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5787
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5788
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5788
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5789
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5789
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5790
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5790
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5791
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5791
|
Burkholderia vietnamiensis
G4 |
New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5793
|
Burkholderia vietnamiensis
G4 |
New product name confidence: Class 2. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(ISS). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
Bcep1808_5793
|
Burkholderia vietnamiensis
G4 |
New product name confidence: Class 2. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [ISS]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Sep 15, 2008 |
Bcep18194_A3197
|
|
New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 87% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_A3204
|
|
New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 83% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_A3374
|
|
New homology: 99% identity ot SigK[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_A3420
|
|
New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 97% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889.
|
Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
|
Sep 15, 2008 |
Bcep18194_A3735
|
|
New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 98% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135.
|
Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
|
Sep 15, 2008 |
Bcep18194_A3906
|
|
New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664.
|
Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
|
Sep 15, 2008 |
Bcep18194_A3984
|
|
New gene name: wbiI. New homology: 97% identity to wbiI[accession number AY523838]. New evidence reference (PMID): 15364998.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Aug 25, 2008 |
Bcep18194_A4085
|
|
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 89% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
Sep 15, 2008 |
Bcep18194_A4239
|
|
New gene name: ecfA1. New product name: sigma factor 70 EcfA1. New product name confidence: Class 1. New homology: 90% identity to EcfA1[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_A4502
|
|
New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New homology: 95% identity to ecfC[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
|
Sep 15, 2008 |
Bcep18194_A4743
|
|
New gene name: ssuR. New product name: transcription factor SsuR. New product name confidence: Class 1. New homology: 99% identity to SsuR [B. cenocepacia J2315]. New evidence reference (PMID): 16997956.
|
Literature review. Based on article by Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland.
|
Sep 15, 2008 |
Bcep18194_A4778
|
|
New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New homology: 90% identity to ecfI[B. cenocepacia J2315]. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|