Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Sep 15, 2008 Bcenmc03_4542 Burkholderia cenocepacia MC0-3 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 94% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 Bcep18194_B0004 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 Bamb_4966 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 Bcen_4539 New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 91% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcen_4541 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcen2424_3822 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcen2424_3824 New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 91% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcenmc03_3702 Burkholderia cenocepacia MC0-3 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 91% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep1808_4203 Burkholderia vietnamiensis G4 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep1808_4205 Burkholderia vietnamiensis G4 New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B1816 New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 33% identity and 53% similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B2272 New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 94% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B2274 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 92% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B2865 New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 41% identity and 54% similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_B2866 New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 36% identity and 54 % similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_C7398 New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 37% identity and 56 similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcep18194_C7399 New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 35% identity and 55 % similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bamb_5548 New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 88% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bamb_5550 New gene name: bceF. New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 89% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319. Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
Sep 15, 2008 Bcen_4800 New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcen2424_3368 New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcen2424_6002 New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcenmc03_4148 Burkholderia cenocepacia MC0-3 New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcenmc03_6493 Burkholderia cenocepacia MC0-3 New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcep18194_B2888 New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 79% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcep18194_C7411 New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 89% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bamb_5145 New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 77% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bamb_6150 New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 86% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823. Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
Sep 15, 2008 Bcen_3643 New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
Sep 15, 2008 Bcen2424_4724 New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
Sep 15, 2008 Bcep18194_B1052 New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 96% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
Sep 15, 2008 Bamb_4116 New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 94% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Center, Calgary, Alberta.
Sep 15, 2008 Bcen_0330 New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcen_1916 New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcen2424_0813 New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcen2424_2528 New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcenmc03_0782 Burkholderia cenocepacia MC0-3 New gene name: caiA. New product name confidence: Class 2. New homology: 96% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcenmc03_2552 Burkholderia cenocepacia MC0-3 New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcenmc03_5576 Burkholderia cenocepacia MC0-3 New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 98% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_0749 Burkholderia vietnamiensis G4 New gene name: caiA. New product name confidence: Class 2. New homology: 94% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_2605 Burkholderia vietnamiensis G4 New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_4001 Burkholderia vietnamiensis G4 New gene name: bviI. New product name: acyl-homoserine lactone synthase BviI. New product name confidence: Class 1. New evidence reference (PMID): 17277056. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_5260 Burkholderia vietnamiensis G4 New gene name: cepR. New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 94% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_5262 Burkholderia vietnamiensis G4 New gene name: cepI. New product name: acyl-homoserine lactone synthase CepI. New product name confidence: Class 1. New evidence reference (PMID): 17277056. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep18194_A3906 New gene name: caiA. New product name confidence: Class 2. New homology: 95% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep18194_A5860 New gene name: fusA. New product name confidence: Class 2. New homology: 94% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bamb_0694 New gene name: caiA. New product name confidence: Class 2. New homology: 94% identity to CaiA[B. cenocepacia J2315][accession number CAR53514.1]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bamb_2576 New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcen_3302 New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 81% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782. Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
Sep 15, 2008 Bcen2424_5066 New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 81% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782. Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
Sep 15, 2008 Bcep18194_B0597 New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class . New homology: 79% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782. Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
Sep 15, 2008 Bamb_4475 New gene name: zmpB. New product name: zinc metalloprotease ZmpB. New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New homology: 77% identity to ZmpB[B. cenocepacia J2315]. New evidence reference (PMID): 16790782. Literature review. Based on article by Sokol, P. A. University of Calgary, Calgary, Alberta.
Sep 15, 2008 Bcen_1823 New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen_2177 New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen_2785 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen_3644 New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen2424_0321 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen2424_2434 New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen2424_2791 New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen2424_4723 New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcenmc03_0301 Burkholderia cenocepacia MC0-3 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcenmc03_5577 Burkholderia cenocepacia MC0-3 New gene name: mgtC. New homology: 94% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep1808_0303 Burkholderia vietnamiensis G4 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 96% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep1808_2896 Burkholderia vietnamiensis G4 New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep1808_5259 Burkholderia vietnamiensis G4 New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_A3420 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 97% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_A5765 New gene name: sodC. New product name: superoxide dismutase, copper/zinc binding SodC. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New evidence reference (PMID): 17325048. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_A6121 New gene name: rpoN. New product name confidence: Class 1. New homology: 91% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_B1053 New gene name: mgtC. New homology: 92% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bamb_0240 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 96% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bamb_2851 New gene name: rpoN. New product name confidence: Class 1. New homology: 89% identity to RpoN [B. cenocepacia J2315]. New evidence reference (PMID): 18195023. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bamb_4115 New gene name: mgtC. New homology: 91% identity to MgtC [B. cenocepacia J2315]. New evidence reference (PMID): 16988222. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen_2003 New gene name: coxG. New product name confidence: Class 2. New homology: 82% identity to CoxG[B. cenocepacia j2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcen_2006 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcen2424_2613 New gene name: coxG. New product name confidence: Class 2. New homology: 82% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcen2424_2616 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcenmc03_2642 Burkholderia cenocepacia MC0-3 New gene name: coxG. New product name confidence: Class 2. New homology: 81% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcenmc03_2645 Burkholderia cenocepacia MC0-3 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcep1808_2728 Burkholderia vietnamiensis G4 New gene name: coxG. New product name confidence: Class 2. New homology: 68% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcep1808_2731 Burkholderia vietnamiensis G4 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcep18194_A5944 New gene name: coxG. New product name confidence: Class 2. New homology: 79% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcep18194_A5947 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bamb_2660 New gene name: coxG. New product name confidence: Class 2. New homology: 76% identity to CoxG[B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bamb_2663 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Apr 22, 2009 BCAL3378 Burkholderia cenocepacia J2315 New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New evidence reference (PMID): 18057135. Literature review. Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta.
Aug 25, 2008 Bcenmc03_6383 Burkholderia cenocepacia MC0-3 New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647. Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
Aug 25, 2008 Bcen2424_5874 New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647. Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
Aug 25, 2008 Bcen_5510 New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647. Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
Aug 25, 2008 Bcep18194_C7212 New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647. Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
Apr 10, 2015 BURPS668_A2179 Burkholderia pseudomallei 668 New gene name: bsaM. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1547. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL1484 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS0974 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2408 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1830 Burkholderia pseudomallei K96243 New gene name: bceF. New product name: tyrosine kinase BceF. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 23435894. New PubMed ID: 25486990. New PubMed ID: 26590274. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4205. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL3111 Burkholderia pseudomallei K96243 New gene name: tssL-1. New product name: type VI secretion system protein TssL-1. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New comment: Gene is part of a cluster known as the type VI secretion system gene cluster tss-1 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-1 cluster later (PMID:22007185) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL1105 Burkholderia pseudomallei K96243 New PubMed ID: 25085508. New comment: The T3SS3 and T6SS1 genes are coordinately and hierarchically regulated by BspR (PMID:20345664) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_A058 Burkholderia pseudomallei 1710b New gene name: bsaM. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1547. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSL1491 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1065 Burkholderia pseudomallei K96243 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2409 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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