Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Apr 30, 2018 BAMB_RS27660 Burkholderia ambifaria AMMD New gene name: bceD. New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4203. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27665 Burkholderia ambifaria AMMD New gene name: bceE. New product name: BceE. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27670 Burkholderia ambifaria AMMD New gene name: bceF. New product name: tyrosine kinase BceF. New product name confidence: Class 2. New PubMed ID: 17114319. New PubMed ID: 23435894. New PubMed ID: 25486990. New PubMed ID: 26590274. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4205. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27675 Burkholderia ambifaria AMMD New gene name: bceG. New product name: BceG. New product name confidence: Class 2. New PubMed ID: 14637140. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4206. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27680 Burkholderia ambifaria AMMD New gene name: bceH. New product name: BceH. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4207. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27685 Burkholderia ambifaria AMMD New gene name: bceI. New product name: BceI. New product name confidence: Class 2. New PubMed ID: 14637140. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4208. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27690 Burkholderia ambifaria AMMD New gene name: bceJ. New product name: BceJ. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 22919582. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4209. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS27695 Burkholderia ambifaria AMMD New gene name: bceK. New product name: BceK. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 22919582. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4210. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28725 Burkholderia ambifaria AMMD New gene name: hmqA. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28730 Burkholderia ambifaria AMMD New gene name: hmqB. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28735 Burkholderia ambifaria AMMD New gene name: hmqC. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28740 Burkholderia ambifaria AMMD New gene name: hmqD. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28745 Burkholderia ambifaria AMMD New gene name: hmqE. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28750 Burkholderia ambifaria AMMD New gene name: hmqF. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28755 Burkholderia ambifaria AMMD New gene name: hmqG. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BamMC406_0785 Burkholderia ambifaria MC40-6 New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Aug 25, 2008 BamMC406_2576 Burkholderia ambifaria MC40-6 New gene name: deh4p. New product name: putative haloacid permease, Deh4p . New product name confidence: Class 2. New homology: 79% identity to putative haloacid permease, Deh4p [B. cepacia MBA4]. New evidence reference (PMID): 17545323. Literature Review. Tsang, Jimmy S. H. The University of Hong Kong
Sep 15, 2008 BamMC406_3107 Burkholderia ambifaria MC40-6 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Apr 22, 2009 BCAL0144 Burkholderia cenocepacia J2315 New gene name: sigK. New product name: sigma factor 70 SigK. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 10, 2015 BCAL0207 Burkholderia cenocepacia J2315 New PubMed ID: 17933889. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 22, 2009 BCAL0207 Burkholderia cenocepacia J2315 New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 63% identity to HppD[A. hydrophila]. New homology: 57% idenity to HppD[P. fluorescens]. New homology: 32% idenity to HppD[S. avermitilis]. New evidence reference (PMID): 17933889. Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
Apr 10, 2015 BCAL0212 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAL0216 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 14, 2010 BCAL0274 Burkholderia cenocepacia J2315 New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL0323 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0337 Burkholderia cenocepacia J2315 New gene name: tssL. New product name: type VI secretion system protein TssL. New gene name synonym: bcsP. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0338 Burkholderia cenocepacia J2315 New gene name: tssK. New product name: type VI secretion system protein TssK. New gene name synonym: bcsO. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0339 Burkholderia cenocepacia J2315 New gene name: tssJ. New product name: type VI secretion system protein TssJ. New gene name synonym: bcsN. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: PDB:3RX9. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0340 Burkholderia cenocepacia J2315 New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0341 Burkholderia cenocepacia J2315 New gene name: tssB. New product name: type VI secretion system protein TssB. New gene name synonym: bcsL. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAL0342 Burkholderia cenocepacia J2315 New product name: BcsK. New gene name: bcsK. New product name confidence: Class 1. New synonym for gene: bcsKC. New synonym for CDS: BcsKC. 0 New GO Accession: GO:0033103(IMP). New PubMed reference: 20729192. New subcellular localization: Outer Membrane (Class 1). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 30, 2018 BCAL0342 Burkholderia cenocepacia J2315 New gene name: tssC. New product name: type VI secretion system protein TssC. New PubMed ID: 18316384. New PubMed ID: 20729192. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAL0343 Burkholderia cenocepacia J2315 New product name: BcsL. New gene name: bcsL. New synonym for gene: bcsLB. New synonym for CDS: BcsLB. New GO Accession: GO:0033103(IGC). New PubMed reference: 20729192. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 30, 2018 BCAL0343 Burkholderia cenocepacia J2315 New gene name: tssD. New product name: type VI secretion system protein TssD. New gene name synonym: hcp. New product name synonym: hemolysin-coregulated protein Hcp. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000333. New subcellular localization PMID: 18316384. New PubMed ID: 8557353. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0344 Burkholderia cenocepacia J2315 New gene name: tssE. New product name: type VI secretion system protein TssE. New gene name synonym: bcsI. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0345 Burkholderia cenocepacia J2315 New gene name: tssF. New product name: type VI secretion system protein TssF. New gene name synonym: bcsH. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0346 Burkholderia cenocepacia J2315 New gene name: tssG. New product name: type VI secretion system protein TssG. New gene name synonym: bcsG. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 23921384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0347 Burkholderia cenocepacia J2315 New gene name: tssH. New product name: type VI secretion system protein TssH. New gene name synonym: clpV. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 19131969. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0348 Burkholderia cenocepacia J2315 New gene name: tssA. New product name: type VI secretion system protein TssA. New gene name synonym: bcsE. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0349 Burkholderia cenocepacia J2315 New gene name: tagL. New product name: type VI secretion system-associated protein TagL. New gene name synonym: bcsD. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0350 Burkholderia cenocepacia J2315 New gene name: tagF. New product name: type VI secretion system-associated protein TagF. New gene name synonym: bcsC. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 22411981. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster.Annotation transferred from: NA. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0351 Burkholderia cenocepacia J2315 New gene name: tssM. New product name: type VI secretion system protein TssM. New gene name synonym: icmF. New product name confidence: Class 1. New PubMed ID: 18316384. New PubMed ID: 22102820. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0352 Burkholderia cenocepacia J2315 New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0404 Burkholderia cenocepacia J2315 New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAL0408 Burkholderia cenocepacia J2315 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 10, 2015 BCAL0408 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAL0409 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAL0471 Burkholderia cenocepacia J2315 New comment: Required for growth in the presence of 20__M CuSO4 (PMID:32090500). New PMID: 32090500. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0508 Burkholderia cenocepacia J2315 New gene name: lpxL. New product name: lipid A biosynthesis myristoyl acyltransferase LpxL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0534 Burkholderia cenocepacia J2315 New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0535 Burkholderia cenocepacia J2315 New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 22, 2009 BCAL0787 Burkholderia cenocepacia J2315 New gene name: sigM. New product name: sigma factor 70 SigM. New product name confidence: Class 2. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 30, 2018 BCAL0788 Burkholderia cenocepacia J2315 New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAL0813 Burkholderia cenocepacia J2315 New GO Accession: GO:2000147(IMP). New PubMed reference: 18195023. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 22, 2009 BCAL0813 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New evidence reference (PMID): 18195023. Literature review. Valvano, M. A. University of Western Ontario, London, Ontario
Apr 30, 2018 BCAL0909 Burkholderia cenocepacia J2315 New gene name: ybeY. New product name: rRNA maturation RNAse YbeY. New product name confidence: Class 2. New PubMed ID: 20807199. New PubMed ID: 23638028. New PubMed ID: 19181801. New comment: .Annotation transferred from: UniprotKB:P0A898. Bart Devreese. Ghent University, Belgium
Apr 30, 2018 BCAL0967 Burkholderia cenocepacia J2315 New product name: heptosyltransferase II WaaF. New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAL0967 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New pathway: Lipopolysaccharide biosynthesis. New pathway: lipopolysaccharide core region biosynthesis. New GO Accession: GO:0009244(IMP). New PubMed reference: 19525227. New PubMed reference: 10543742. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL0967 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New pathway: Lipopolysaccharide biosynthesis. New pathway: lipopolysaccharide core region biosynthesis. New GO accession: GO:0009244 [IMP]. New evidence reference (PMID): 19525227. New evidence reference (PMID): 10543742. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAL0995 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18771721. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAL0998 Burkholderia cenocepacia J2315 New GO Accession: GO:0006979(IMP). New PubMed reference: 18227267. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 22, 2009 BCAL0998 Burkholderia cenocepacia J2315 New gene name: ecfA1. New product name: EcfA1. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAL1369 Burkholderia cenocepacia J2315 New gene name: ecfC. New product name: sigma factor 70 EcfC. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 10, 2015 BCAL1536 Burkholderia cenocepacia J2315 New gene name: rpoN. New product name: alternative sigma factor RpoN. New product name confidence: Class 1. New PubMed ID: 15213146. New PubMed ID: 18195023. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAL1538 Burkholderia cenocepacia J2315 New product name: Hfq2. New gene name: hfq2. New product name confidence: Class 1. New GO Accession: GO:0006979(IPI). New GO Accession: GO:0003723(EXP). New GO Accession: GO:0003677(). New PubMed reference: 21278292. New PubMed reference: 19942656. New PubMed reference: 23142676. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAL1656 Burkholderia cenocepacia J2315 New GO Accession: GO:0051176(IMP). New PubMed reference: 16997956. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 22, 2009 BCAL1656 Burkholderia cenocepacia J2315 New product name: transcription factor SsuR. New product name confidence: Class 1. New evidence reference (PMID): 16997956. Literature review. Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland
Feb 4, 2013 BCAL1672 New GO Accession: GO:0071236(EXP). New PubMed reference: 19761586. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAL1674 Burkholderia cenocepacia J2315 New GO Accession: GO:0071236(EXP). New PubMed reference: 19761586. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAL1674 Burkholderia cenocepacia J2315 New product name: RND-3 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAL1675 Burkholderia cenocepacia J2315 New GO Accession: GO:0071236(EXP). New PubMed reference: 19761586. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAL1675 Burkholderia cenocepacia J2315 New product name: RND-3 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAL1676 Burkholderia cenocepacia J2315 New GO Accession: GO:0071236(EXP). New PubMed reference: 19761586. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAL1676 Burkholderia cenocepacia J2315 New product name: RND-3 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-3 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-3; ; Major RND-3 substrates are nalidixic acid, ciprofloxacin, tobramycin, chlorhexidine. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAL1688 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IMP). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAL1688 Burkholderia cenocepacia J2315 New GO Accession: GO:1900704(IMP). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAL1688 Burkholderia cenocepacia J2315 New PubMed ID: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAL1688 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IMP]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 22, 2009 BCAL1688 Burkholderia cenocepacia J2315 New gene name: ecfI. New product name: sigma factor 70 EcfI. New product name confidence: Class 2. New evidence reference (PMID): 17784978. Literature review. Raymond C. Lo, Simon Fraser University
Jan 25, 2011 BCAL1689 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IGC). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1689 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1690 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IGC). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1690 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1691 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IGC). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1691 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1692 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IGC). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1692 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1693 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IGC). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1693 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1694 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IGC). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1694 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1695 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IGC). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1695 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAL1696 Burkholderia cenocepacia J2315 New GO Accession: GO:0019290(IMP). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1696 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IMP). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1696 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IMP]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAL1697 Burkholderia cenocepacia J2315 New GO Accession: GO:0019290(IMP). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1697 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IMP). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1697 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO accession: GO:0033212 [IMP]. New evidence reference (PMID): 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL1698 Burkholderia cenocepacia J2315 New pathway: ornibactin biosynthesis and transport. New GO Accession: GO:0033212(IGC). New PubMed reference: 16672617. New genomic context: ornibactin gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
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