Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Apr 30, 2018 WQ49_RS13905 Burkholderia cenocepacia K56-2 New gene name: paaB. New product name: PaaB. New product name synonym: putative subunit PaaB of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 16997993. New comment: . Annotation transferred from: UniProtKB:P76078. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS13910 Burkholderia cenocepacia K56-2 New gene name: paaA. New product name: PaaA. New product name confidence: Class 1. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment: Putative monooxygenase subunit of ring 1,2-phenylacetyl-CoA epoxidase . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS34840 Burkholderia cenocepacia K56-2Valvano New gene name: ptwD4. New product name: type IV secretion system-coupling protein ptwD4. New gene name synonym: trwB. New product name confidence: Class 2. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. .Annotation transferred from: UniProtKB:P09130. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34830 Burkholderia cenocepacia K56-2Valvano New gene name: ptwC. New gene name synonym: trwC. New product name confidence: Class 2. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. .Annotation transferred from: UniProtKB:Q8PRK1. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34785 Burkholderia cenocepacia K56-2Valvano New gene name: ptwL. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34780 Burkholderia cenocepacia K56-2Valvano New gene name: ptwE. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34775 Burkholderia cenocepacia K56-2Valvano New gene name: ptwK. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34770 Burkholderia cenocepacia K56-2Valvano New gene name: ptwB. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34760 Burkholderia cenocepacia K56-2Valvano New gene name: ptwV. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34755 Burkholderia cenocepacia K56-2Valvano New gene name: ptwC. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34705 Burkholderia cenocepacia K56-2Valvano New gene name: ptwW. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34700 Burkholderia cenocepacia K56-2Valvano New gene name: ptwU. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34695 Burkholderia cenocepacia K56-2Valvano New gene name: pwbC. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34680 Burkholderia cenocepacia K56-2Valvano New gene name: ptwN. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34665 Burkholderia cenocepacia K56-2Valvano New gene name: ptwF. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34645 Burkholderia cenocepacia K56-2Valvano New gene name: ptwH. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34640 Burkholderia cenocepacia K56-2Valvano New gene name: ptwG. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19275 Burkholderia cenocepacia K56-2Valvano New gene name: virD4. New product name: type IV secretion system-coupling protein VirD4. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19270 Burkholderia cenocepacia K56-2Valvano New gene name: virB11. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19265 Burkholderia cenocepacia K56-2Valvano New gene name: virB10. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19260 Burkholderia cenocepacia K56-2Valvano New gene name: virB9. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19255 Burkholderia cenocepacia K56-2Valvano New gene name: virB8. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19250 Burkholderia cenocepacia K56-2Valvano New gene name: virB5. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19245 Burkholderia cenocepacia K56-2Valvano New gene name: virB6. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19240 Burkholderia cenocepacia K56-2Valvano New gene name: virB4. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19235 Burkholderia cenocepacia K56-2Valvano New gene name: virB3. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS19230 Burkholderia cenocepacia K56-2Valvano New gene name: virB2. New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia K56-2 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0335 Burkholderia cenocepacia J2315 New gene name: virD4. New product name: pseudogene (virD4). New PubMed ID: 18931103. New comment: The virD4 homologue (BCAM0335) contains a frameshift mutation (PMID: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0334 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0333 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0332 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0331 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0330 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0329 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0328 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0327 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0326 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0325 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0324 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1557 Burkholderia mallei ATCC 23344 New gene name: bprQ. New product name: regulator of type III secretion system-3 (T3SS-3) BprQ. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 27147217. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1554. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1556 Burkholderia mallei ATCC 23344 New gene name: bprP. New product name: regulator of type III secretion system-3 (T3SS-3) BprP. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1553. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1552 Burkholderia mallei ATCC 23344 New gene name: orgB. New product name: type III secretion system stator protein OrgB (T3SS-3). New gene name synonym: sctL. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1552. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1551 Burkholderia mallei ATCC 23344 New product name: type III secretion system ATPase co-factor OrgA (T3SS-3). New gene name synonym: sctK. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1551. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1550 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner membrane ring component (T3SS-3). New gene name synonym: sctJ. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1550. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1549 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner rod/minor needle component BsaK (T3SS-3). New gene name synonym: sctI. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1549. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1548 Burkholderia mallei ATCC 23344 New product name: type III secretion system outer rod/major needle component BsaL (T3SS-3). New gene name synonym: sctF. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16631790. New PubMed ID: 17617421. New PubMed ID: 18491382. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1548. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1547 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner membrane ring component BsaM (T3SS-3). New gene name synonym: sctD. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 24884837. New PubMed ID: 15528446. New PubMed ID: 10944190. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1547. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1545 Burkholderia mallei ATCC 23344 New product name: regulator of type III secretion system effector proteins BsaN (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New PubMed ID: 20345664. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1546. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1544 Burkholderia mallei ATCC 23344 New product name: type III secretion system outer membrane ring protein / secretin BsaO (T3SS-3). New gene name synonym: sctC. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25591178. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1545. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1543 Burkholderia mallei ATCC 23344 New product name: type III secretion system gatekeeper protein BsaP (T3SS-3). New gene name synonym: sctW. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1544. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1542 Burkholderia mallei ATCC 23344 New product name: type III secretion system export apparatus protein BsaQ (T3SS-3). New gene name synonym: sctV. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 18654761. New PubMed ID: 16153244. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1543. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1541 Burkholderia mallei ATCC 23344 New product name: chaperone protein BsaR (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16164564. New PubMed ID: 14645290. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1542. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1540 Burkholderia mallei ATCC 23344 New product name: type III secretion system ATPase BsaS (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25605762. New PubMed ID: 20345664. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1541. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1539 Burkholderia mallei ATCC 23344 New product name: type III secretion system stalk protein BsaT (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1540. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1538 Burkholderia mallei ATCC 23344 New product name: needle length control protein BsaU (T3SS-3). New gene name synonym: sctP. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 10944190. New PubMed ID: 16714590. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1539. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1537 Burkholderia mallei ATCC 23344 New product name: type III secretion system cystoplasmic ring protein BsaV (T3SS-3). New gene name synonym: sctQ. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1538. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1536 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner membrane export apparatus protein BsaW (T3SS-3). New gene name synonym: sctR. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1537. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1535 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner membrane export apparatus protein BsaX (T3SS-3). New gene name synonym: sctS. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1536. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1534 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner membrane export apparatus protein BsaY (T3SS-3). New gene name synonym: sctT. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1535. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1533 Burkholderia mallei ATCC 23344 New product name: type III secretion system export apparatus protein BsaZ (T3SS-3). New gene name synonym: sctU. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 18443088. New PubMed ID: 25635268. New PubMed ID: 12410823. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1534. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1532 Burkholderia mallei ATCC 23344 New product name: type III secretion chaperone protein BicA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 20345664. New PubMed ID: 25085508. New PubMed ID: 27997726. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1533. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1531 Burkholderia mallei ATCC 23344 New product name: translocator protein BipB (T3SS-3). New gene name synonym: sctE. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1532. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1530 Burkholderia mallei ATCC 23344 New product name: translocator protein BipC (T3SS-3). New gene name synonym: sctB. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 27634329. New PubMed ID: 28028452. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1531. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1529 Burkholderia mallei ATCC 23344 New product name: regulatory protein BprA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1530. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1528 Burkholderia mallei ATCC 23344 New product name: type III secretion system needle tip protein BipD (T3SS-3). New gene name synonym: sctA. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1529. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1525 Burkholderia mallei ATCC 23344 New product name: BapB (T3SS-3). New product name confidence: Class 2. New PubMed ID: 26624293. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1527. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1524 Burkholderia mallei ATCC 23344 New product name: type III secretion system effector protein BapC (T3SS-3). New product name confidence: Class 2. New subcellular localization: Extracellular (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization cross-ref: BGD:BPSS1526. New subcellular localization PMID: 26624293. New PubMed ID: 26624293. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1526. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1523 Burkholderia mallei ATCC 23344 New product name: guanine nucleotide exchange factor BopE (T3SS-3). New product name confidence: Class 2. New PubMed ID: 18052936. New PubMed ID: 18654761. New PubMed ID: 24626296. New PubMed ID: 17041850. New PubMed ID: 25635268. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1525. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1521 Burkholderia mallei ATCC 23344 New product name: type III secretion system effector protein BopA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 18483470. New PubMed ID: 28664150. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1524. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1639 Burkholderia mallei ATCC 23344 New gene name: sctT. New product name: type III secretion system inner membrane export apparatus protein SctT (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1629. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1637 Burkholderia mallei ATCC 23344 New product name: type III secretion system ATPase SctN (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1627. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1636 Burkholderia mallei ATCC 23344 New gene name: sctL. New product name: type III secretion system stator protein SctL (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1626. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1635 Burkholderia mallei ATCC 23344 New gene name: sctK. New product name: type III secretion system inner membrane component SctK (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1625. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1633 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner rod component (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1623. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1632 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner rod component (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1622. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1631 Burkholderia mallei ATCC 23344 New gene name: sctU. New product name: autoprotease, early/middle substrate switch SctU (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1621. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1630 Burkholderia mallei ATCC 23344 New product name: type III secretion system export apparatus protein SctV (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1620. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1629 Burkholderia mallei ATCC 23344 New product name: type III secretion system cytoplasmic ring protein SctQ (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1618. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1628 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner membrane export apparatus protein SctR (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1617. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1627 Burkholderia mallei ATCC 23344 New product name: type III secretion system inner membrane export apparatus protein SctS (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1616. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1626 Burkholderia mallei ATCC 23344 New product name: type III secretion system secreted regulator (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1615. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1624 Burkholderia mallei ATCC 23344 New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1623 Burkholderia mallei ATCC 23344 New gene name: sctF. New product name: type III secretion system outer rod/major needle component SctF (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1612. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1622 Burkholderia mallei ATCC 23344 New product name: type III secretion system chaperone protein BpsaB2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1611. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1621 Burkholderia mallei ATCC 23344 New product name: type III secretion system regulator (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1610. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1602 Burkholderia mallei ATCC 23344 New gene name: sctC. New product name: type III secretion system outer membrane ring protein / secretin SctC (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: .Annotation transferred from: BGD:BPSS1592. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL1105 Burkholderia pseudomallei K96243 New PubMed ID: 25085508. New comment: The T3SS3 and T6SS1 genes are coordinately and hierarchically regulated by BspR (PMID:20345664) Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0687 Burkholderia pseudomallei K96243 New gene name: bprS. New product name: two-component sensor kinase BprS. New product name confidence: Class 1. New PubMed ID: 27147217. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS0688 Burkholderia pseudomallei K96243 New gene name: bprR. New product name: two-component response regulator BprR. New product name confidence: Class 1. New PubMed ID: 27147217. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1629 Burkholderia pseudomallei K96243 New gene name: bpscT2. New product name: type III secretion system inner membrane export apparatus protein BpscT2 (T3SS-2). New gene name synonym: sctT. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1628 Burkholderia pseudomallei K96243 New gene name: bpspD2. New product name: type III secretion system stalk protein BpspD2 (T3SS-2). New gene name synonym: sctO. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1627 Burkholderia pseudomallei K96243 New gene name: bpscN2. New product name: type III secretion system ATPase BpscN2 (T3SS-2). New gene name synonym: sctN. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1626 Burkholderia pseudomallei K96243 New gene name: bpscL2. New product name: type III secretion system stator protein BpscL2 (T3SS-2). New gene name synonym: sctL. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1625 Burkholderia pseudomallei K96243 New gene name: bpspH2. New product name: type III secretion system inner membrane component BpspH2 (T3SS-2). New gene name synonym: sctK. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1624 Burkholderia pseudomallei K96243 New gene name: bpscJ2. New product name: type III secretion system inner membrane ring component BpscJ2 (T3SS-2). New gene name synonym: sctJ. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1623 Burkholderia pseudomallei K96243 New gene name: bpspJ2. New product name: type III secretion system inner rod component BpspJ2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1622 Burkholderia pseudomallei K96243 New gene name: bpspK2. New product name: type III secretion system inner rod component BpspK2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1621 Burkholderia pseudomallei K96243 New gene name: bpscU2. New product name: autoprotease, early/middle substrate switch BpscU2 (T3SS-2). New gene name synonym: sctU. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1620 Burkholderia pseudomallei K96243 New gene name: bpscV2. New product name: type III secretion system export apparatus protein BpscV2 (T3SS-2). New gene name synonym: sctV. New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1619 Burkholderia pseudomallei K96243 New gene name: bpsaP2. New product name: type III secretion system needle length protein BpsaP2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. pseudomallei. B. pseudomallei T3SS-1 and T3SS-2, but not T3SS-3 contribute to pathogenicity in Solanum lycopersicum (tomato) but not human monocytic cell line THP-1. (PMID:20109238). Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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