Burkholderia cenocepacia J2315, BCAL3478 (ecfB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Burkholderia cenocepacia J2315
GCF_000009485.1|latest
Locus Tag
BCAL3478
NCBI Locus TagQU43_RS54120
Name
ecfB
Replicon chromosome 1
Genomic location 3817661 - 3818182 (+ strand)

Cross-References

RefSeq WP_006487309.1
GI 206561815
Entrez 6933231
GI 206561815
INSDC CAR53801.1
NCBI Locus Tag QU43_RS54120
NCBI Old Locus Tag BCAL3478
RefSeq WP_006487309.1,GeneID
UniParc UPI00017B99CC
UniProtKB Acc B4E6K8
UniProtKB ID B4E6K8_BURCJ
UniRef100 UniRef100_A0A0D1C479
UniRef50 UniRef50_A0A0A3ZSI7
UniRef90 UniRef90_G7HDC5

Product

Feature Type CDS
Coding Frame 1
Product Name
putative RNA polymerase sigma factor
Product Name Confidence: Class 1
Synonyms sigma factor 70 EcfB
Evidence for Translation
Charge (pH 7) 2.48
Kyte-Doolittle Hydrophobicity Value -0.394
Molecular Weight (kDa) 19967.5
Isoelectric Point (pI) 9.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 429 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG000007 (617 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAL3478
Search term: ecfB

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability.
Menard A, de Los Santos PE, Graindorge A, Cournoyer B
BMC Genomics 2007 Sep 4;8:308
PubMed ID: 17784948