Burkholderia cenocepacia MC0-3, Bcenmc03_1339 (ecfC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Burkholderia cenocepacia MC0-3
GCF_000019505.1|latest
Locus Tag
Bcenmc03_1339
NCBI Locus TagBCENMC03_RS06820
Name
ecfC
Replicon chromosome 1
Genomic location 1478876 - 1479385 (+ strand)

Cross-References

RefSeq WP_012328291.1
GI 170732689
Entrez 6123017
GI 170732689
INSDC ACA90514.1
NCBI Locus Tag BCENMC03_RS06820
NCBI Old Locus Tag Bcenmc03_1339
RefSeq WP_012328291.1
UniParc UPI0000E9A71E
UniProtKB Acc B1JZM1
UniProtKB ID B1JZM1_BURCC
UniRef100 UniRef100_B1JZM1
UniRef50 UniRef50_J7JC34
UniRef90 UniRef90_J7JC34

Product

Feature Type CDS
Coding Frame 1
Product Name
ECF subfamily RNA polymerase sigma-24 factor
Product Name Confidence: Class 1
Synonyms sigma factor 70 EcfC
Evidence for Translation
Charge (pH 7) 2.14
Kyte-Doolittle Hydrophobicity Value -0.083
Molecular Weight (kDa) 18835.4
Isoelectric Point (pI) 8.25

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 139 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG006075 (556 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Bcenmc03_1339
Search term: ecfC

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability.
Menard A, de Los Santos PE, Graindorge A, Cournoyer B
BMC Genomics 2007 Sep 4;8:308
PubMed ID: 17784948