Burkholderia vietnamiensis G4, Bcep1808_4196

Gene Feature Overview

Strain	Burkholderia vietnamiensis G4 GCF_000016205.1|latest
Locus Tag	Bcep1808_4196
NCBI Locus Tag	BCEP1808_RS20990
Name
Replicon	chromosome 2
Genomic location	1002971 - 1004239 (+ strand)

Cross-References

RefSeq	WP_011881528.1
GI	134292905
Entrez	4950413
GI	134292905
INSDC	ABO57176.1
NCBI Locus Tag	BCEP1808_RS20990
NCBI Old Locus Tag	Bcep1808_4196
RefSeq	WP_011881528.1
UniParc	UPI0000F59559
UniProtKB Acc	A4JLM3
UniProtKB ID	A4JLM3_BURVG
UniRef100	UniRef100_A4JLM3
UniRef50	UniRef50_C5CSL3
UniRef90	UniRef90_A4JLM3

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase ECF-subfamily sigma factor
Synonyms
Evidence for Translation
Charge (pH 7)	-5.66
Kyte-Doolittle Hydrophobicity Value	0.028
Molecular Weight (kDa)	45677.8
Isoelectric Point (pI)	6.03

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 149 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group	BG004844 (654 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Bcep1808_4196 Search term: RNA polymerase ECF-subfamily sigma factor

Human Homologs

References