Burkholderia cenocepacia J2315, BCAL1179

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 9 67 4.4E-18
CDD cd08422 PBP2_CrgA_like 97 293 3.21069E-68
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 7 116 5.65E-21
Gene3D G3DSA:3.40.190.10 169 271 1.8E-55
Gene3D G3DSA:3.40.190.10 97 295 1.8E-55
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 7 64 25.302
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 8 95 7.0E-25
SUPERFAMILY SSF53850 93 301 4.52E-42
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 95 299 3.8E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.