Burkholderia cenocepacia J2315, BCAL1011

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50110
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.8.60 320 390 1.4E-9
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 1 188 4.41E-39
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 441 461 9.7E-7
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 424 441 9.7E-7
Gene3D G3DSA:3.40.50.300 137 319 4.9E-53
SMART SM00448 IPR001789 Signal transduction response regulator, receiver domain 2 115 6.2E-31
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 367 460 2.57E-13
CDD cd00009 AAA 168 292 1.20571E-14
ProSiteProfiles PS50110 Response regulatory domain profile. IPR001789 Signal transduction response regulator, receiver domain 3 119 37.94
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 5 114 1.9E-23
CDD cd00156 REC IPR001789 Signal transduction response regulator, receiver domain 5 118 7.98751E-30
Gene3D G3DSA:3.40.50.2300 2 136 1.8E-29
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 144 384 5.52E-50
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 144 383 48.057
Gene3D G3DSA:1.10.10.60 416 457 3.1E-10
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 418 457 1.2E-10
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 144 315 3.3E-51
SMART SM00382 IPR003593 AAA+ ATPase domain 164 312 5.0E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.