Burkholderia cenocepacia J2315, BCAL0813 (rpoN)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:2000147	positive regulation of cell motility	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	18195023	Reviewed by curator
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04963	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PS00717	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04963	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0001216	DNA-binding transcription activator activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PS00717	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bcj02020	Two-component system	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00309	Sigma-54 factor, Activator interacting domain (AID)	IPR000394	RNA polymerase sigma factor 54	4	48	3.9E-14
MobiDBLite	mobidb-lite	consensus disorder prediction			70	115	-
MobiDBLite	mobidb-lite	consensus disorder prediction			70	87	-
PIRSF	PIRSF000774		IPR000394	RNA polymerase sigma factor 54	1	501	1.5E-155
ProSitePatterns	PS00717	Sigma-54 factors family signature 1.	IPR000394	RNA polymerase sigma factor 54	389	408	-
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	417	428	5.5E-27
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	212	229	5.5E-27
Pfam	PF04963	Sigma-54 factor, core binding domain	IPR007046	RNA polymerase sigma factor 54, core-binding domain	137	328	1.3E-56
Gene3D	G3DSA:1.10.10.60				442	499	2.7E-22
Pfam	PF04552	Sigma-54, DNA binding domain	IPR007634	RNA polymerase sigma factor 54, DNA-binding	344	499	6.8E-66
Coils	Coil				341	361	-
TIGRFAM	TIGR02395	rpoN_sigma: RNA polymerase sigma-54 factor	IPR000394	RNA polymerase sigma factor 54	9	499	5.0E-141
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	401	413	5.5E-27
ProSiteProfiles	PS50044	Sigma-54 factors family profile.			353	479	48.989
ProSitePatterns	PS00718	Sigma-54 factors family signature 2.	IPR000394	RNA polymerase sigma factor 54	480	487	-
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	475	493	5.5E-27
Gene3D	G3DSA:1.10.10.1330		IPR038709	RNA polymerase sigma-54 factor, core-binding domain superfamily	142	272	1.3E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.