Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Coils | Coil | 424 | 451 | - | |||
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 469 | 482 | 4.8E-31 |
Gene3D | G3DSA:1.10.601.10 | 172 | 514 | 7.4E-131 | |||
Pfam | PF03979 | Sigma-70 factor, region 1.1 | IPR007127 | RNA polymerase sigma factor 70, region 1.1 | 61 | 140 | 2.2E-26 |
Pfam | PF04545 | Sigma-70, region 4 | IPR007630 | RNA polymerase sigma-70 region 4 | 613 | 666 | 4.0E-19 |
TIGRFAM | TIGR02393 | RpoD_Cterm: RNA polymerase sigma factor RpoD | IPR012760 | RNA polymerase sigma factor RpoD, C-terminal | 441 | 677 | 5.2E-119 |
Pfam | PF00140 | Sigma-70 factor, region 1.2 | IPR009042 | RNA polymerase sigma-70 region 1.2 | 157 | 188 | 3.1E-13 |
SUPERFAMILY | SSF88946 | IPR013325 | RNA polymerase sigma factor, region 2 | 174 | 512 | 4.24E-100 | |
Coils | Coil | 56 | 76 | - | |||
Pfam | PF04546 | Sigma-70, non-essential region | IPR007631 | RNA polymerase sigma factor 70, non-essential domain | 198 | 414 | 5.9E-66 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 493 | 501 | 4.8E-31 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 638 | 653 | 4.8E-31 |
Hamap | MF_00963 | RNA polymerase sigma factor RpoD [rpoD]. | IPR028630 | RNA polymerase sigma factor RpoD | 45 | 678 | 42.428 |
MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 268 | - | ||
MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | ||
Gene3D | G3DSA:1.10.10.10 | IPR036388 | Winged helix-like DNA-binding domain superfamily | 595 | 679 | 4.2E-36 | |
Gene3D | G3DSA:1.10.220.120 | IPR042189 | Sigma-70 factor, region 1.1 superfamily | 59 | 121 | 7.4E-25 | |
Coils | Coil | 332 | 352 | - | |||
ProSitePatterns | PS00715 | Sigma-70 factors family signature 1. | IPR000943 | RNA polymerase sigma-70 | 469 | 482 | - |
MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | ||
SUPERFAMILY | SSF88659 | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 518 | 591 | 3.55E-18 | |
Coils | Coil | 639 | 659 | - | |||
ProSitePatterns | PS00716 | Sigma-70 factors family signature 2. | IPR000943 | RNA polymerase sigma-70 | 638 | 664 | - |
Coils | Coil | 240 | 262 | - | |||
TIGRFAM | TIGR02937 | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family | IPR014284 | RNA polymerase sigma-70 like domain | 441 | 666 | 2.9E-39 |
Pfam | PF04539 | Sigma-70 region 3 | IPR007624 | RNA polymerase sigma-70 region 3 | 524 | 600 | 2.3E-25 |
Coils | Coil | 674 | 680 | - | |||
SUPERFAMILY | SSF88659 | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 575 | 676 | 5.79E-28 | |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 617 | 629 | 4.8E-31 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 447 | 514 | 7.9E-21 |
Gene3D | G3DSA:1.10.10.10 | IPR036388 | Winged helix-like DNA-binding domain superfamily | 518 | 593 | 2.4E-29 | |
CDD | cd06171 | Sigma70_r4 | 607 | 665 | 1.199E-13 | ||
MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 266 | - | ||
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 653 | 664 | 4.8E-31 |