Burkholderia cenocepacia H111, I35_RS29335

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50885
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50885
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00181
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00181
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 61 76 3.1E-65
Pfam PF02203 Tar ligand binding domain homologue IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding 1 165 1.8E-37
CDD cd11386 MCP_signal 293 482 2.95925E-51
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 5 30 3.1E-65
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 362 389 3.1E-65
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 285 314 3.1E-65
SUPERFAMILY SSF47170 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily 27 177 5.62E-39
SMART SM00304 IPR003660 HAMP domain 211 263 1.8E-5
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 439 468 3.1E-65
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 479 6.1E-51
SUPERFAMILY SSF58104 243 512 2.88E-67
SMART SM00319 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding 45 177 3.3E-6
SMART SM00283 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 264 511 2.4E-91
Gene3D G3DSA:1.20.120.30 42 173 3.4E-29
CDD cd00181 Tar_Tsr_LBD IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding 45 158 1.46833E-18
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 391 420 3.1E-65
Gene3D G3DSA:1.10.287.950 211 513 8.8E-82
ProSiteProfiles PS50111 Bacterial chemotaxis sensory transducers domain profile. IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 268 497 49.799
ProSiteProfiles PS50885 HAMP domain profile. IPR003660 HAMP domain 211 263 8.841
Coils Coil 468 495 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.