Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Sep 15, 2008 Bcep18194_B0094 New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 89% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen_5259 New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 94% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen2424_5600 New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 94% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcenmc03_4628 Burkholderia cenocepacia MC0-3 New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New homology: 94% identity to ecfK [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Apr 22, 2009 BCAM0849 Burkholderia cenocepacia J2315 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Sep 15, 2008 Bamb_5540 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 76% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_B2282 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 77% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen_4549 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 79% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen2424_3814 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 79% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcenmc03_3710 Burkholderia cenocepacia MC0-3 New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New homology: 79% identity to ecfL[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Apr 22, 2009 BCAL3486 Burkholderia cenocepacia J2315 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Sep 15, 2008 Bcenmc03_0038 Burkholderia cenocepacia MC0-3 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 83% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcep18194_A3204 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 83% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bamb_0012 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 84% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen_0051 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 86% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Sep 15, 2008 Bcen2424_0019 New gene name: ecfM. New product name: sigma factor 70 EcfM. New product name confidence: Class 1. New homology: 86% identity to ecfM [B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
Apr 30, 2018 BTH_I2393 Burkholderia thailandensis E264 ATCC 700388 New gene name: fenI. New product name confidence: Class 2. New PubMed ID: 29087175. New comment: .Annotation transferred from: UniProtKB:Q9L7W7. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BTH_II0249 Burkholderia thailandensis E264 ATCC 700388 New gene name: fha-6. New pathway: T6SS-6 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 6 (T6SS-6). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 30, 2018 AK34_RS17810 Burkholderia dolosa AU0158 New gene name: fixJ. New product name: FixJ. New product name synonym: two-component response regulator FixJ. New product name confidence: Class 1. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P10958. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS08900 Burkholderia dolosa AU0158 New gene name: fixK. New product name: FixK. New product name confidence: Class 2. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P13295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM0049 Burkholderia cenocepacia J2315 New gene name: fixK. New product name: FixK. New product name confidence: Class 2. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P13295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS17815 Burkholderia dolosa AU0158 New gene name: fixL. New product name: FixL. New product name synonym: two-component sensor protein FixL. New product name confidence: Class 1. New PubMed ID: 28046077. New PubMed ID: 24316980. New comment: .Annotation transferred from: UniProtKB:P10955. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS0 Burkholderia cenocepacia K56-2Valvano New gene name: fliI. New product name: FliI. New product name confidence: Class 1. New PubMed ID: 11895941. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAM2224 Burkholderia cenocepacia J2315 New gene name: fptA. New product name confidence: Class 1. New PubMed ID: 15102796. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Sep 15, 2008 Bcen_0166 New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 100% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135. Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
Sep 15, 2008 Bcen2424_0649 New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 100% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135. Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
Sep 15, 2008 Bcenmc03_0616 Burkholderia cenocepacia MC0-3 New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 100% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135. Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
Sep 15, 2008 Bcep18194_A3735 New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 98% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135. Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
Sep 15, 2008 Bamb_0544 New gene name: fur. New product name: ferric uptake regulator Fur. New product name confidence: Class 2. New homology: 99% identity to Fur[B. cenocepacia J2315]. New evidence reference (PMID): 18057135. Literature review. Based on article by Dennis, J. J. Department of Biological Sciences, University of Alberta, Edmonton, Alberta..
Apr 22, 2009 Bxe_A0793 Burkholderia xenovorans LB400 New gene name: fusA. New product name confidence: Class 1. New evidence reference (PMID): 10625618. New evidence reference (PMID): 17522847. Literature review. Geoffrey L. Winsor, Simon Fraser University
Sep 15, 2008 Bcep18194_A5860 New gene name: fusA. New product name confidence: Class 2. New homology: 94% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcep1808_2605 Burkholderia vietnamiensis G4 New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bamb_2576 New gene name: fusA. New product name confidence: Class 2. New homology: 96% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcen_1916 New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcen2424_2528 New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Sep 15, 2008 Bcenmc03_2552 Burkholderia cenocepacia MC0-3 New gene name: fusA. New product name confidence: Class 2. New homology: 97% identity to FusA[ B. cenocepacia J2315][accession number CAR53040]. New evidence reference (PMID): 17187664. Literature review. Based on article by Sokol, P. A. University of Calgary Health Sciences Centre, Calgary, Alberta.
Apr 30, 2018 BURCENK562V_RS29130 Burkholderia cenocepacia K56-2Valvano New gene name: galE. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3117. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_0018 Burkholderia pseudomallei 668 New gene name: gspM. New product name confidence: Class 1. New PubMed ID: 24866793. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_0019 Burkholderia pseudomallei 668 New gene name: gspN. New PubMed ID: 24866793. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BTH_I2962 Burkholderia thailandensis E264 ATCC 700388 New gene name: hcp-1. New product name: hcp-1. New pathway: T6SS-1 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 1 (T6SS-1). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BTH_II0123 Burkholderia thailandensis E264 ATCC 700388 New gene name: hcp-2. New product name: Hcp-2. New pathway: T6SS-2 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 2 (T6SS-2). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BTH_II1899 Burkholderia thailandensis E264 ATCC 700388 New gene name: hcp-4. New product name: Hcp-4. New pathway: T6SS-4 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 4 (T6SS-4). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BTH_II0868 Burkholderia thailandensis E264 ATCC 700388 New gene name: hcp-5. New product name: Hcp-5. New pathway: T6SS-5 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 5 (T6SS-5). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BTH_II0260 Burkholderia thailandensis E264 ATCC 700388 New gene name: hcp-6. New pathway: T6SS-6 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 6 (T6SS-6). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BMAA0742 New gene name: hcp1. New product name confidence: Class 1. New PubMed ID: 17555434. New PubMed ID: 21300775. New comment: Purified His-tagged BMAA0742 was recognized by glanders antiserum from a horse, a human and mice, indicating that this Hcp-family protein is produced in vivo during infection. New genomic context: T6SS-1 gene cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS20270 Burkholderia cenocepacia K56-2Valvano New gene name: hemP. New product name confidence: Class 2. New PubMed ID: 28625994. New comment: .Annotation transferred from: BGD:Bmul_1072. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_1072 Burkholderia multivorans ATCC 17616 New gene name: hemP. New product name: Hemin uptake protein HemP. New product name confidence: Class 1. New PubMed ID: 28625994. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2297 Burkholderia cenocepacia J2315 New gene name: hemP. New product name: Hemin uptake protein HemP. New product name confidence: Class 2. New PubMed ID: 28625994. New comment: .Annotation transferred from: BGD:Bmul_1072. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS3 Burkholderia cenocepacia K56-2Valvano New gene name: hldA. New product name confidence: Class 1. New PubMed ID: 16513737. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS3 Burkholderia cenocepacia K56-2Valvano New gene name: hldD. New product name confidence: Class 1. New PubMed ID: 16513737. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28725 Burkholderia ambifaria AMMD New gene name: hmqA. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1935 Burkholderia thailandensis E264 ATCC 700388 New gene name: hmqA. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BP1026B_II0535 Burkholderia pseudomallei 1026b New gene name: hmqA. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28730 Burkholderia ambifaria AMMD New gene name: hmqB. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1934 Burkholderia thailandensis E264 ATCC 700388 New gene name: hmqB. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BP1026B_II0536 Burkholderia pseudomallei 1026b New gene name: hmqB. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28735 Burkholderia ambifaria AMMD New gene name: hmqC. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1933 Burkholderia thailandensis E264 ATCC 700388 New gene name: hmqC. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BP1026B_II0537 Burkholderia pseudomallei 1026b New gene name: hmqC. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28740 Burkholderia ambifaria AMMD New gene name: hmqD. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1932 Burkholderia thailandensis E264 ATCC 700388 New gene name: hmqD. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BP1026B_II0538 Burkholderia pseudomallei 1026b New gene name: hmqD. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28745 Burkholderia ambifaria AMMD New gene name: hmqE. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1931 Burkholderia thailandensis E264 ATCC 700388 New gene name: hmqE. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BP1026B_II0539 Burkholderia pseudomallei 1026b New gene name: hmqE. New product name confidence: Class 2. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28750 Burkholderia ambifaria AMMD New gene name: hmqF. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BP1026B_II0540 Burkholderia pseudomallei 1026b New gene name: hmqF. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1930 Burkholderia thailandensis E264 ATCC 700388 New gene name: hmqF. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New PubMed ID: 22320268. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS28755 Burkholderia ambifaria AMMD New gene name: hmqG. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II1929 Burkholderia thailandensis E264 ATCC 700388 New gene name: hmqG. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BP1026B_II0541 Burkholderia pseudomallei 1026b New gene name: hmqG. New product name confidence: Class 1. New PubMed ID: 18539738. New PubMed ID: 28676791. New comment: Belongs to the HMAQ biosynthesis operon hmqABCDEFG Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_3338 Burkholderia multivorans ATCC 17616 New gene name: hmuR. New product name: TonB-dependent outer membrane heme receptor HmuR. New product name confidence: Class 1. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_II2139 Burkholderia thailandensis E264 ATCC 700388 New gene name: hmuR. New product name: TonB-dependent outer membrane heme receptor HmuR. New product name confidence: Class 1. New PubMed ID: 28746878. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM2626 Burkholderia cenocepacia J2315 New gene name: hmuR. New product name: TonB-dependent outer membrane heme receptor HmuR. New product name confidence: Class 2. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon.Annotation transferred from: BGD:Bmul_3338. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS16510 Burkholderia cenocepacia K56-2Valvano New gene name: hmuR. New product name: TonB-dependent outer membrane heme receptor HmuR. New product name confidence: Class 2. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon.Annotation transferred from: BGD:Bmul_3338. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_3337 Burkholderia multivorans ATCC 17616 New gene name: hmuS. New product name: cytoplasmic heme-binding protein/heme oxygenase HmuS. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_3336 Burkholderia multivorans ATCC 17616 New gene name: hmuT. New product name: periplasmic heme-binding protein HmuT. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_3335 Burkholderia multivorans ATCC 17616 New gene name: hmuU. New product name: permease subunit of inner membrane heme transporter HmuU. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_2134 Burkholderia multivorans ATCC 17616 New gene name: hpnI. New product name confidence: Class 1. New PubMed ID: 22006009. New comment: Belongs to putative hopanoid biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_2133 Burkholderia multivorans ATCC 17616 New gene name: hpnJ. New product name confidence: Class 1. New PubMed ID: 22006009. New comment: Belongs to putative hopanoid biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 Bmul_2132 Burkholderia multivorans ATCC 17616 New gene name: hpnK. New product name confidence: Class 1. New PubMed ID: 22006009. New comment: Belongs to putative hopanoid biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Sep 15, 2008 Bcep1808_0303 Burkholderia vietnamiensis G4 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 96% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bamb_0240 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 96% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcep18194_A3420 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 97% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen_2785 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcen2424_0321 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Sep 15, 2008 Bcenmc03_0301 Burkholderia cenocepacia MC0-3 New gene name: hppD. New product name: 4-hydroxyphenylpyruvic acid dioxygenase HppD. New product name confidence: Class 1. New homology: 99% identity to HppD [B. cenocepacia J2315]. New evidence reference (PMID): 17933889. Literature review. Based on article by Valvano, M. A. University of Western Ontario, London, Ontario.
Apr 22, 2009 BCAL2829 Burkholderia cenocepacia J2315 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 1. New evidence reference (PMID): 17220310. Literature review. Valvano, M. A. University of Western Ontario, Ontario
Apr 10, 2015 BURCENK562V_RS0 Burkholderia cenocepacia K56-2Valvano New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 1. New subcellular localization: Periplasmic (1). New subcellular localization evidence code (ECO): ECO:0000279 .New subcellular localization PMID: 17220310 .New PubMed ID: 17220310. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Sep 15, 2008 Bcep1808_2731 Burkholderia vietnamiensis G4 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bamb_2663 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 89% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcen_2006 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcen2424_2616 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcenmc03_2645 Burkholderia cenocepacia MC0-3 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Sep 15, 2008 Bcep18194_A5947 New gene name: htrA. New product name: HtrA protease. New product name confidence: Class 2. New subcellular localization confidence: Class 2. New homology: 92% identity to HtrA [B. cenocepacia J2315]. New evidence reference (PMID): 17220310. Literature review. Based on article by Valvano, M. A. University of Western Ontario, Ontario.
Apr 10, 2015 BMAA0729.1 New gene name: icmF1. New product name confidence: Class 2. New PubMed ID: 17555434. New PubMed ID: 21300775. New genomic context: T6SS-1 gene cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29160 Burkholderia cenocepacia K56-2Valvano New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New gene name synonym: wbxY. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate.Annotation transferred from: UniProtKB:E9NYT3. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 CH72_RS04090 Burkholderia ambifaria AMMD New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BamMC406_0785 Burkholderia ambifaria MC40-6 New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BAMB_RS03910 Burkholderia ambifaria AMMD New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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