| Apr 20, 2020 |
I35_RS18295
|
Burkholderia cenocepacia
H111 |
New gene name: copS. New product name: CopS. New product name confidence: Class 2. Name transferred from: UniProtKB:Q47457. New PMID: 11004187.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
Bxe_A2876
|
Burkholderia xenovorans
LB400 |
New product name: Fe2+-dependent oxygenase. New product name confidence: Class 2. New evidence reference (PMID): 19754880.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1551
|
Burkholderia pseudomallei
K96243 |
New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0212
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL2998
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: cepR2. New product name: CepR2. New product name confidence: Class 1. New PubMed ID: 19201791.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1284
|
Burkholderia thailandensis
E264 ATCC 700388 |
New PubMed ID: 28665591. New comment: Member of the toxoflavin-like gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_3051
|
Burkholderia multivorans
ATCC 17616 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0873
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssA-5. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-5 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170). While other T6SSs were dispensible, T6SS-5 is required for virulence in a murine acute melioidosis model (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
I35_RS18300
|
Burkholderia cenocepacia
H111 |
New gene name: copR. New product name: CopR. New product name confidence: Class 2. Name transferred from: UniProtKB:Q47456. New PMID: 11004187.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
Bth_I1158
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Nucleoside kinase. New product name confidence: Class 2. New evidence reference (PMID): 19021762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS668_A2183
|
Burkholderia pseudomallei
668 |
New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0224
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3005
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAM0239a
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 14977960. New PubMed ID: 16041013. New comment: Found on cenocepacia island (cci).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II1285
|
Burkholderia thailandensis
E264 ATCC 700388 |
New PubMed ID: 28665591. New comment: Member of the toxoflavin-like gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
AK34_RS13285
|
Burkholderia dolosa
AU0158 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0249
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
I35_RS18325
|
Burkholderia cenocepacia
H111 |
New gene name: cusF. New product name: CusF. New product name confidence: Class 2. New PMID: 32090500.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1710b_A059
|
Burkholderia pseudomallei
1710b |
New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0249
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3016
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: cciI. New product name: N-acyl homoserine lactone synthase, CciI. New product name confidence: Class 1. New PubMed ID: 14977960. New PubMed ID: 16041013.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06400
|
Burkholderia glumae
BGR1 |
New gene name: toxA. New product name: methyltransferase ToxA. New PubMed ID: 27070241. New comment: Further details in Identification of Proteins Involved in Toxin Production by Pseudomonas glumae. published in Japanese Journal of Phytopathology 64(2):75-79,January 1998..Annotation transferred from: GenBank:AAV52806.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS15650
|
Burkholderia ambifaria
AMMD |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0250
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagI-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
I35_RS18330
|
Burkholderia cenocepacia
H111 |
New gene name: copC. New product name: CopC. New product name confidence: Class 2. New PMID: 32090500.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1106A_A209
|
Burkholderia pseudomallei
1106a |
New gene name: orgA. New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3021
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAM0240
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New PubMed ID: 16041013.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06410
|
Burkholderia glumae
BGR1 |
New gene name: toxB. New product name: ToxB. New product name confidence: Class 2. New PubMed ID: 27070241. New comment: Member of the toxoflavin biosynthesis gene cluster.Annotation transferred from: GenBank:AAV52807.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I0210
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rqpS. New product name: two-component regulatory system, sensor histidine kinase RqpS. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15640.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0251
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssJ-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
I35_RS18335
|
Burkholderia cenocepacia
H111 |
New gene name: copD. New product name confidence: Class 2. New PMID: 32090500.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0732
|
Burkholderia mallei
NCTC 10247 |
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0268
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3034
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: cciR. New product name: CciR. New product name confidence: Class 1. New PubMed ID: 16041013.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06420
|
Burkholderia glumae
BGR1 |
New gene name: toxC. New product name: ToxC. New product name confidence: Class 2. New PubMed ID: 27070241. New comment: Member of the toxoflavin biosynthesis gene cluster.Annotation transferred from: GenBank:AAV52808.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0534
|
Burkholderia cenocepacia
J2315 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0252
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssK-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAL2200
|
Burkholderia cenocepacia
J2315 |
New gene name: bptpA. New product name: Burkholderia phosphotyrosine phosphatase, BPtpA. New product name synonym: Low molecular weight protein tyrosine phosphatase, class II.I. New product name confidence: Class 1. New PMID: 31978399.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2053
|
Burkholderia mallei
NCTC 10229 |
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0273
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3041
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAM1870
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 16041013.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06430
|
Burkholderia glumae
BGR1 |
New gene name: toxD. New product name: ToxD. New PubMed ID: 27070241. New comment: Further details in Identification of Proteins Involved in Toxin Production by Pseudomonas glumae. published in Japanese Journal of Phytopathology 64(2):75-79,January 1998..Annotation transferred from: GenBank:AAV52809.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS15645
|
Burkholderia cenocepacia
H111 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 1. New PubMed ID: 29363827. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0253
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssL-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BURCENK562V_RS20790
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: bptpA. New product name: Burkholderia phosphotyrosine phosphatase, BPtpA. New product name synonym: Low molecular weight protein tyrosine phosphatase, class II.I. New product name confidence: Class 1. New PMID: 31978399.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1551
|
|
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0275
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3043
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: cepI. New product name: N-acyl homoserine lactone synthase, CepI. New product name confidence: Class 1. New PubMed ID: 16041013.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06440
|
Burkholderia glumae
BGR1 |
New gene name: toxE. New product name: ToxE. New product name confidence: Class 2. New PubMed ID: 27070241. New comment: Member of the toxoflavin biosynthesis gene cluster.Annotation transferred from: GenBank:AAV52810.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS04450
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0254
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssM-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
QU43_RS53446
|
Burkholderia cenocepacia
J2315 |
New gene name: bdhR1. New gene name synonym: ncS27. New product name: Burkholderia double-hairpin sRNA regulator bdhR1. New product name confidence: Class 1. New PMID: 31464662.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BTH_II0839
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bsaZ. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1534.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0280
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3056
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL1688
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 16672617. New genomic context: ornibactin gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06390
|
Burkholderia glumae
BGR1 |
New gene name: toxR. New product name: LysR type regulatory protein ToxR. New product name confidence: Class 1. New PubMed ID: 19465657. New PubMed ID: 15522077. New PubMed ID: 27070241. New PubMed ID: 15522077. New PubMed ID: 28665591. New comment: .Annotation transferred from: GenBank:AAV52816.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_3052
|
Burkholderia multivorans
ATCC 17616 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0255
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagF-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
QU43_RS64696
|
Burkholderia cenocepacia
J2315 |
New PMID: 29359187.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1534
|
Burkholderia pseudomallei
K96243 |
New product name confidence: Class 1. New PubMed ID: 20951592.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0281
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3073
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL1699
|
Burkholderia cenocepacia
J2315 |
New product name: L-ornithine 5-monooxygenase.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06330
|
Burkholderia glumae
BGR1 |
New gene name: toxJ. New product name: LuxR family transcriptional regulator ToxJ. New product name confidence: Class 1. New PubMed ID: 19465657. New PubMed ID: 15522077. New PubMed ID: 28665591. New comment: .Annotation transferred from: GenBank:AAV52815.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
AK34_RS13280
|
Burkholderia dolosa
AU0158 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0256
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system-associated protein TagE-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAS0208
|
Burkholderia cenocepacia
J2315 |
New PMID: 30513124.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS668_A2164
|
Burkholderia pseudomallei
668 |
New gene name: bsaZ. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1534.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0298
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3079
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS2
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: pvdA. New product name confidence: Class 1. New PubMed ID: 10456885.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06350
|
Burkholderia glumae
BGR1 |
New gene name: toxI. New product name: ToxI. New product name confidence: Class 2. New PubMed ID: 15522077. New PubMed ID: 28665591. New comment: Member of the toxoflavin transporter gene cluster.Annotation transferred from: GenBank:AAV52814.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS15655
|
Burkholderia ambifaria
AMMD |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0257
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssA-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BCAS0225
|
Burkholderia cenocepacia
J2315 |
New PMID: 30513124.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1710b_A057
|
Burkholderia pseudomallei
1710b |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1534.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0312
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3089
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAM2224
|
Burkholderia cenocepacia
J2315 |
New gene name: fptA. New product name confidence: Class 1. New PubMed ID: 15102796.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06360
|
Burkholderia glumae
BGR1 |
New gene name: toxH. New product name: ToxH. New product name confidence: Class 2. New PubMed ID: 15522077. New PubMed ID: 28665591. New comment: Member of the toxoflavin transporter gene cluster.Annotation transferred from: GenBank:AAV52813.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_I0209
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: rqpR. New product name: two-component regulatory system, response regulator RqpR. New product name confidence: Class 2. New PubMed ID: 29363827. New comment: .Annotation transferred from: BGD:I35_RS15645.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0258
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssB-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
Bmul_3689
|
Burkholderia multivorans
ATCC 17616 |
New gene name: penA. New product name: class A beta-lactamase, PenA. New product name confidence: Class 1. New comment: B. multivorans PenA is an inhibitor-resistant carbapenemase, whereas the B. pseudomallei PenA is an extended spectrum beta-lactamase (PMID:27620956). New PMID: 30012762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1106A_A207
|
Burkholderia pseudomallei
1106a |
New gene name: bsaZ. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1534.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0332
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL3105
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAM2630
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: phuV. New product name confidence: Class 2. New PubMed ID: 17187664.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g06370
|
Burkholderia glumae
BGR1 |
New gene name: toxG. New product name: ToxG. New product name confidence: Class 2. New PubMed ID: 15522077. New PubMed ID: 28665591. New comment: Member of the toxoflavin transporter gene cluster.Annotation transferred from: GenBank:AAV52812.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS18935
|
Burkholderia cenocepacia
H111 |
New gene name: rpfR. New product name: cis-2-dodecenoic acid receptor RpfR. New product name confidence: Class 1. New PubMed ID: 22949660. New PubMed ID: 28956352. New PubMed ID: 28463102. New PubMed ID: 23815566. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0259
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: type VI secretion system protein TssC-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
Bmul_6008
|
Burkholderia multivorans
ATCC 17616 |
New gene name: ampC1. New gene name synonym: ampC. New product name: class C beta-lactamase. New product name confidence: Class 1. New comment: AmpC1 from B. multivorans ATCC 17616 possesses a narrow spectrum, and the contribution of AmpC1 to _-lactam resistance appears to be negligible, yet expression of AmpC1 is regulated by _-lactam inducers including imipenem (PMID:30012762). New PMID: 30012762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0751
|
Burkholderia mallei
NCTC 10247 |
New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: Locus Tag:BPSS1534.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL0338
|
Burkholderia pseudomallei
K96243 |
New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0001119 .New subcellular localization PMID: 25635268 .New PubMed ID: 25635268.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|