Log of Annotation Updates

2953 annotation updates returned Previous1..567891011121314..30Next
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Date Locus Tag Strain Description Submitter
Apr 30, 2018 BamMC406_0785 Burkholderia ambifaria MC40-6 New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 CH72_RS04090 Burkholderia ambifaria AMMD New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 1. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1469 Burkholderia thailandensis E264 ATCC 700388 New gene name: rmlB. New product name: dTDP-d-glucose 4,6-dehydratase RmlB. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1470 Burkholderia thailandensis E264 ATCC 700388 New gene name: rmlA. New product name: glucose-1-phosphate thymidylyltransferase RmlA. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1471 Burkholderia thailandensis E264 ATCC 700388 New gene name: rmlC. New product name: dTDP-6-deoxy-d-xylo-4-hexulose 3,5-epimerase RmlC. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1472 Burkholderia thailandensis E264 ATCC 700388 New gene name: rmlD. New product name: dTDP-6-deoxy-l-lyxo-4-hexulose reductase RmlD. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Belongs to the Type II O-antigenic polysaccharide biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BTH_I1476 Burkholderia thailandensis E264 ATCC 700388 New gene name: wbiB. New product name confidence: Class 1. New PubMed ID: 21640586. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29050 Burkholderia cenocepacia K56-2Valvano New gene name: rmlB. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1469. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29055 Burkholderia cenocepacia K56-2Valvano New gene name: rmlA. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD::BTH_I1470. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29060 Burkholderia cenocepacia K56-2Valvano New gene name: rmlC. New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BGD:BTH_I1471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29065 Burkholderia cenocepacia K56-2Valvano New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BGD:BTH_I1472. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29070 Burkholderia cenocepacia K56-2Valvano New gene name: wzm. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3131. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29075 Burkholderia cenocepacia K56-2Valvano New gene name: wzt. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3130. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29080 Burkholderia cenocepacia K56-2Valvano New gene name: vioA. New product name: nucleotide sugar aminotransferase VioA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3129. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29085 Burkholderia cenocepacia K56-2Valvano New gene name: wbxF. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3128. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29090 Burkholderia cenocepacia K56-2Valvano New product name: WbxE. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster. New comment: B cenocepacia J2315, but not K56-2, is O-antigen deficient due to a transposon insertion in this gene..Annotation transferred from: BGD:BCAL3125. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29095 Burkholderia cenocepacia K56-2Valvano New gene name: wbxD. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3124. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29100 Burkholderia cenocepacia K56-2Valvano New gene name: wbxC. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3123. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29105 Burkholderia cenocepacia K56-2Valvano New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3122. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29110 Burkholderia cenocepacia K56-2Valvano New product name confidence: Class 1. New PubMed ID: 26116716. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3121. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29115 Burkholderia cenocepacia K56-2Valvano New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3120. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29120 Burkholderia cenocepacia K56-2Valvano New product name confidence: Class 1. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3119. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29125 Burkholderia cenocepacia K56-2Valvano New gene name: wecA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3118. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29130 Burkholderia cenocepacia K56-2Valvano New gene name: galE. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3117. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29135 Burkholderia cenocepacia K56-2Valvano New gene name: wbxB. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3116. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29140 Burkholderia cenocepacia K56-2Valvano New gene name: wbxA. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3115. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29145 Burkholderia cenocepacia K56-2Valvano New gene name: wzx. New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster.Annotation transferred from: BGD:BCAL3114. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS29160 Burkholderia cenocepacia K56-2Valvano New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New gene name synonym: wbxY. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate.Annotation transferred from: UniProtKB:E9NYT3. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3135 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1469. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3134 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BD:BTH_I1470. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3133 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1471. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3132 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 21640586. New comment: .Annotation transferred from: BGD:BTH_I1472. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3131 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3130 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3129 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3128 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3125 New product name: pseudogene (WbxB). New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster. New comment: B cenocepacia J2315, but not K56-2, is O-antigen deficient due to a transposon insertion in this gene. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3124 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3123 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3122 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3121 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 26116716. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3120 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3119 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3118 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3117 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3116 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3115 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3114 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3111 Burkholderia cenocepacia J2315 New gene name: kdoO. New product name: Kdo 3-hydroxylase KdoO. New product name confidence: Class 2. New PubMed ID: 28085228. New PubMed ID: 21178073. New PubMed ID: 25204504. New comment: Responsible for Ko formation with Kdo2-lipid A as a substrate.Annotation transferred from: UniProtKB:E9NYT3. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3110 Burkholderia cenocepacia J2315 New product name: WaaA. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: UniProtKB:P0AC75. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSL2795 Burkholderia pseudomallei K96243 New product name synonym: Sedoheptulose 7-phosphate isomerase. New PubMed ID: 19923728. New PubMed ID: 20447408. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0967 Burkholderia cenocepacia J2315 New product name: heptosyltransferase II WaaF. New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3112 Burkholderia cenocepacia J2315 New product name: heptosyltransferase I WaaC. New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2409 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2408 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2407 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2406 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2405 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2404 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2403 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL2402 Burkholderia cenocepacia J2315 New PubMed ID: 19525227. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL3310 Burkholderia cenocepacia J2315 New gene name: bcnB. New product name: BcnB. New product name confidence: Class 1. New PubMed ID: 28292982. New comment: Miguel Valvano, Queen's University of Belfast
Apr 30, 2018 BCAL3311 Burkholderia cenocepacia J2315 New gene name: bcnA. New product name: BcnA. New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000279. New subcellular localization PMID: 28292982. New PubMed ID: 28292982. New comment: Miguel Valvano, Queen's University of Belfast
Apr 30, 2018 BCAM0049 Burkholderia cenocepacia J2315 New gene name: fixK. New product name: FixK. New product name confidence: Class 2. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P13295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS08900 Burkholderia dolosa AU0158 New gene name: fixK. New product name: FixK. New product name confidence: Class 2. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P13295. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS17810 Burkholderia dolosa AU0158 New gene name: fixJ. New product name: FixJ. New product name synonym: two-component response regulator FixJ. New product name confidence: Class 1. New PubMed ID: 28046077. New comment: .Annotation transferred from: UniProtKB:P10958. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS17815 Burkholderia dolosa AU0158 New gene name: fixL. New product name: FixL. New product name synonym: two-component sensor protein FixL. New product name confidence: Class 1. New PubMed ID: 28046077. New PubMed ID: 24316980. New comment: .Annotation transferred from: UniProtKB:P10955. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BGL_RS05055 Burkholderia glumae PG1 New gene name: tepR. New product name: toxoflavin and eps regulator, TepR. New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS04835. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 KS03_RS21965 Burkholderia glumae ATCC 33617 New gene name: tepR. New product name: toxoflavin and eps regulator, TepR. New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS04835. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BGL_RS03475 Burkholderia glumae PG1 New gene name: ntpR. New product name: NtpR. New product name synonym: negative regulator of toxoflavin production LysR . New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS03475. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 KS03_RS20605 Burkholderia glumae ATCC 33617 New gene name: ntpR. New product name: NtpR. New product name synonym: negative regulator of toxoflavin production LysR . New product name confidence: Class 2. New PubMed ID: 28036242. New comment: .Annotation transferred from: BGLU_RS03475. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BPSS1228 Burkholderia pseudomallei K96243 New PubMed ID: 28003338. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0909 Burkholderia cenocepacia J2315 New gene name: ybeY. New product name: rRNA maturation RNAse YbeY. New product name confidence: Class 2. New PubMed ID: 20807199. New PubMed ID: 23638028. New PubMed ID: 19181801. New comment: .Annotation transferred from: UniprotKB:P0A898. Bart Devreese. Ghent University, Belgium
Apr 30, 2018 BTH_RS10711 Burkholderia thailandensis E264 ATCC 700388 New CDS gene identified at 2571843..2572394 (+ strand). New start coordinate: 2571843. New end coordinate: 2572394. New gene name: malH. New product name: MalH. New PubMed ID: 22765305. New comment: Part of the malleilactone biosynthetic gene cluster.. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS63756 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2089713..2089769 (+ strand). New start coordinate: 2089713. New end coordinate: 2089769. New gene name: ncS62. New product name: double-hairpin RNA ncS62. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS53446 Burkholderia cenocepacia J2315 New ncRNA gene identified at 3666557..3666648 (- strand). New start coordinate: 3666557. New end coordinate: 3666648. New gene name: ncS27. New product name: double-hairpin RNA ncS27. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS38736 Burkholderia cenocepacia J2315 New ncRNA gene identified at 479440..479506 (- strand). New start coordinate: 479440. New end coordinate: 479506. New gene name: ncS05. New product name: double-hairpin RNA ncS05. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS37471 Burkholderia cenocepacia J2315 New ncRNA gene identified at 221314..221372 (+ strand). New start coordinate: 221314. New end coordinate: 221372. New gene name: ncS03. New product name: double-hairpin RNA ncS03. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS48121 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2548559..2548685 (+ strand). New start coordinate: 2548559. New end coordinate: 2548685. New gene name: ncS63. New product name: small regulatory ncRNA ncS63. New product name synonym: BTH_s39. New product name confidence: Class 1. New PubMed ID: 29142288. New PubMed ID: 24884623. New comment: Confirmed by Northern Blot. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS41981 Burkholderia cenocepacia J2315 New ncRNA gene identified at 1179680..1179807 (+ strand). New start coordinate: 1179680. New end coordinate: 1179807. New gene name: ncS54. New product name: small regulatory ncRNA ncS54. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS65806 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2568766..2568918 (+ strand). New start coordinate: 2568766. New end coordinate: 2568918. New gene name: ncS37. New product name: small regulatory ncRNA ncS37. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS64696 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2304213..2304378 (- strand). New start coordinate: 2304213. New end coordinate: 2304378. New gene name: ncS35. New product name: small regulatory ncRNA ncS35. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS51716 Burkholderia cenocepacia J2315 New ncRNA gene identified at 3297991..3298074 (- strand). New start coordinate: 3297991. New end coordinate: 3298074. New gene name: ncS25. New product name: small regulatory ncRNA ncS25. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS49841 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2912201..2912283 (+ strand). New start coordinate: 2912201. New end coordinate: 2912283. New gene name: ncS16. New product name: small regulatory ncRNA ncS16. New product name confidence: Class 1. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS48101 Burkholderia cenocepacia J2315 New ncRNA gene identified at 2545296..2545503 (- strand). New start coordinate: 2545296. New end coordinate: 2545503. New gene name: ncS11. New product name: small regulatory ncRNA ncS11. New gene name synonym: ncRNA13. New product name confidence: Class 1. New PubMed ID: 29142288. New PubMed ID: 19234113. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS39311 Burkholderia cenocepacia J2315 New ncRNA gene identified at 603652..603910 (+ strand). New start coordinate: 603652. New end coordinate: 603910. New gene name: ncS06. New product name: small regulatory ncRNA ncS06. New gene name synonym: ncRNA7. New product name synonym: BTH_s1. New product name confidence: Class 1. New PubMed ID: 29142288. New PubMed ID: 24884623. New PubMed ID: 19234113. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS37856 Burkholderia cenocepacia J2315 New ncRNA gene identified at 292949..293053 (+ strand). New start coordinate: 292949. New end coordinate: 293053. New gene name: ncS04. New product name: small regulatory ncRNA ncS04. New product name synonym: anti-hemB. New product name confidence: Class 1. New PubMed ID: 29142288. New PubMed ID: 23282220. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 QU43_RS36586 Burkholderia cenocepacia J2315 New ncRNA gene identified at 20581..20691 (+ strand). New start coordinate: 20581. New end coordinate: 20691. New gene name: ncS01. New product name: small regulatory ncRNA ncS01. New PubMed ID: 29142288. New comment: Confirmed by Northern Blot. 3'end confirmed by RACE. 3'end defined in dRNA-Seq data. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS1 Burkholderia cenocepacia K56-2Valvano New gene name: opcI. New product name confidence: Class 1. New PubMed ID: 14977960. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAM0267 Burkholderia cenocepacia J2315 New product name: porin. New product name confidence: Class 1. New PubMed ID: 14977960. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS1 Burkholderia cenocepacia K56-2Valvano New gene name: amiI. New product name confidence: Class 1. New PubMed ID: 14977960. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAM0265 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 14977960. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS2 Burkholderia cenocepacia K56-2Valvano New gene name: paaZ. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAL0408 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS2 Burkholderia cenocepacia K56-2Valvano New gene name: paaF. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAL0409 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS0 Burkholderia cenocepacia K56-2Valvano New gene name: paaA. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAL0216 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURCENK562V_RS0 Burkholderia cenocepacia K56-2Valvano New gene name: paaE. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAL0212 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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