Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Jan 25, 2011 BCAM2057 Burkholderia cenocepacia J2315 New pathway: Type III secretion system (T3SS). New GO Accession: GO:0030254(IGC). New PubMed reference: 11557147. New PubMed reference: 15183868. New genomic context: type III secretion system (TTS) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2057 Burkholderia cenocepacia J2315 New pathway: Type III secretion system (T3SS). New GO accession: GO:0030254 [IGC]. New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2058 Burkholderia cenocepacia J2315 New PubMed reference: 11557147. New PubMed reference: 15183868. New genomic context: type III secretion system (TTS) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2058 Burkholderia cenocepacia J2315 New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2059 Burkholderia cenocepacia J2315 New PubMed reference: 11557147. New PubMed reference: 15183868. New genomic context: type III secretion system (TTS) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2059 Burkholderia cenocepacia J2315 New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2107 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO Accession: GO:0004096(IDA). New GO Accession: GO:0004601(IDA). New PubMed reference: 17371508. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2107 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New EC Number: 1.11.1.6;1.11.1.7. New GO accession: GO:0004096 [IDA]. New GO accession: GO:0004601 [IDA]. New evidence reference (PMID): 17371508. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAM2140 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New GO Accession: GO:0044010(IGC). New PubMed reference: 22950027. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAM2141 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New GO Accession: GO:0044010(IMP). New PubMed reference: 22950027. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAM2142 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New GO Accession: GO:0044010(IMP). New PubMed reference: 22950027. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAM2143 Burkholderia cenocepacia J2315 New product name: BapA. New gene name: bapA. New product name confidence: Class 1. New synonym for gene: adhA. New synonym for CDS: AdhA. New subcellular localization: Outer Membrane. New subcellular localization confidence: Class 1. New GO Accession: GO:0044010(IMP). New PubMed reference: 23185499. New PubMed reference: 16313619. New PubMed reference: 22950027. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2143 Burkholderia cenocepacia J2315 New GO accession: GO:0016337 [IMP]. New evidence reference (PMID): 16113259. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2143 Burkholderia cenocepacia J2315 New GO Accession: GO:0016337(IMP). New PubMed reference: 16113259. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2165 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New GO Accession: GO:0008800(ISS). New PubMed reference: 19075063. New PubMed reference: 9371340. New PubMed reference: 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAM2165 Burkholderia cenocepacia J2315 New gene name: penB. New product name confidence: Class 1. New PMIDs: 26416862, 19075063. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2165 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 19075063. New evidence reference (PMID): 9371340. New evidence reference (PMID): 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAM2166 Burkholderia cenocepacia J2315 New gene name: penR. New PMID: 26416862. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2224 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2224 Burkholderia cenocepacia J2315 New gene name: fptA. New product name confidence: Class 1. New PubMed ID: 15102796. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2224 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2225 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2225 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2226 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2226 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2227 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2227 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2228 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2228 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2230 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(ISS). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2230 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New GO accession: GO:0033212 [ISS]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2231 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2231 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2232 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2232 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2233 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2233 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2234 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2234 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2235 Burkholderia cenocepacia J2315 New comment : The ability of J2315 to produce pyochelin is compromised since the pyochelin biosynthesis gene pchF (BCAM2228) contains a frameshift mutation. Genes encoding transport and utilization of pyochelin in J2315 are intact and therefore probably functional.. New GO Accession: GO:0033212(IGC). New PubMed reference: 9846750. New PubMed reference: 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2235 Burkholderia cenocepacia J2315 New GO accession: GO:0033212 [IGC]. New evidence reference (PMID): 9846750. New evidence reference (PMID): 18931103. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAM2307 Burkholderia cenocepacia J2315 New GO Accession: GO:0008237(IMP). New GO Accession: GO:0015628(IMP). New PubMed reference: 22848580. New PubMed reference: 16790782. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2307 Burkholderia cenocepacia J2315 New subcellular localization: Extracellular (1). New subcellular localization evidence code (ECO): ECO:0000279 .New subcellular localization PMID: 16790782 . Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 22, 2009 BCAM2307 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New evidence reference (PMID): 16790782. Literature review. Raymond C. Lo, Simon Fraser University
Apr 22, 2009 BCAM2371 Burkholderia cenocepacia J2315 New gene name: sigI. New product name: sigma factor 70 sigI. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Apr 20, 2020 BCAM2418 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 1. New comment: Comparative DNA sequence analysis of BCAM2418 genes (structural and promoter regions) of various B. cenocepacia isolates revealed that their lengths greatly vary according to the number of repetitive elements (PMID:32097539). New PMIDs: 22919579, 32097539. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2449 Burkholderia cenocepacia J2315 New product name synonym: RND-10 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAM2549 Burkholderia cenocepacia J2315 New subcellular localization: Outer Membrane. New subcellular localization confidence: Class 1. New PubMed reference: 8834871. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAM2550 Burkholderia cenocepacia J2315 New product name synonym: RND-10 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2551 Burkholderia cenocepacia J2315 New product name synonym: RND-10 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of ceoAB-opcM (rnd-10) operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump (RND-10); Major substrates of RND-10 are chloramphenicol, flouroquinolones and trimethoprim. New PMIDs: 14755343, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAM2552 Burkholderia cenocepacia J2315 New product name: LlpE. New product name confidence: Class 3. New PubMed reference: 15837391. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 30, 2018 BCAM2626 Burkholderia cenocepacia J2315 New gene name: hmuR. New product name: TonB-dependent outer membrane heme receptor HmuR. New product name confidence: Class 2. New PubMed ID: 28625994. New PubMed ID: 22745846. New comment: Member of the hemin uptake (hmu) operon.Annotation transferred from: BGD:Bmul_3338. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BCAM2630 Burkholderia cenocepacia J2315 New gene name synonym: phuV. New product name confidence: Class 2. New PubMed ID: 17187664. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 14, 2010 BCAM2632 Burkholderia cenocepacia J2315 New product name: Class A penicillin-binding protein. New product name confidence: Class 1. New evidence reference (PMID): 19924480. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAM2738 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New PubMed ID: 23761261. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 22, 2009 BCAM2748 Burkholderia cenocepacia J2315 New gene name: ecfK. New product name: sigma factor 70 EcfK. New product name confidence: Class 1. New evidence reference (PMID): 17784948. Literature review. Raymond C. Lo, Simon Fraser University
Jan 25, 2011 BCAM2756 Burkholderia cenocepacia J2315 New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2756 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 15175296. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2756 Burkholderia cenocepacia J2315 New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2757 Burkholderia cenocepacia J2315 New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2757 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 15175296. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2757 Burkholderia cenocepacia J2315 New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2758 Burkholderia cenocepacia J2315 New GO accession: GO:0016337 [IMP]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2758 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 12686638. New PubMed ID: 15175296. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2758 Burkholderia cenocepacia J2315 New GO Accession: GO:0016337(IMP). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2759 Burkholderia cenocepacia J2315 New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2759 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 12686638. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2759 Burkholderia cenocepacia J2315 New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2760 Burkholderia cenocepacia J2315 New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2760 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 12686638. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2760 Burkholderia cenocepacia J2315 New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2761 Burkholderia cenocepacia J2315 New GO accession: GO:0016337 [IMP]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 14638436. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2761 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 12686638. New PubMed ID: 17537663. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2761 Burkholderia cenocepacia J2315 New GO Accession: GO:0016337(IMP). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 14638436. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAM2762 Burkholderia cenocepacia J2315 New GO accession: GO:0016337 [IGC]. New evidence reference (PMID): 7585148. New evidence reference (PMID): 18931103. New evidence reference (PMID): 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 10, 2015 BCAM2762 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New PubMed ID: 12686638. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Jan 25, 2011 BCAM2762 Burkholderia cenocepacia J2315 New GO Accession: GO:0016337(IGC). New PubMed reference: 7585148. New PubMed reference: 18931103. New PubMed reference: 16113259. New genomic context: part of cable pilus (cbl) gene cluster. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAS0081 Burkholderia cenocepacia J2315 New GO Accession: GO:0071236(EXP). New PubMed reference: 21781329. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAS0156 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 14982755. New PubMed reference: 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAS0156 Burkholderia cenocepacia J2315 New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 14982755. New evidence reference (PMID): 18931103. Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAS0167 Burkholderia cenocepacia J2315 New GO Accession: GO:0071236(EXP). New PubMed reference: 21781329. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAS0201 Burkholderia cenocepacia J2315 New product name: AfcF. New gene name: afcF. New product name confidence: Class 1. New GO Accession: GO:0071978(IMP). New GO Accession: GO:0044010(IMP). New GO Accession: GO:0006629(IMP). New PubMed reference: 23306671. New PubMed reference: 21690240. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Feb 4, 2013 BCAS0208 Burkholderia cenocepacia J2315 New product name: AfcE. New gene name: afcE. New product name confidence: Class 1. New GO Accession: GO:0071978(IMP). New GO Accession: GO:0044010(IMP). New GO Accession: GO:0006629(IMP). New PubMed reference: 23306671. New PubMed reference: 21690240. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAS0208 Burkholderia cenocepacia J2315 New PMID: 30513124. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 22, 2009 BCAS0222 Burkholderia cenocepacia J2315 New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 94% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823. Literature review. Schell, M. A. University of Georgia, Athens, Georgia
Jan 14, 2010 BCAS0223 Burkholderia cenocepacia J2315 New gene name: afcC. New product name: AfcC. New product name confidence: Class 2. New evidence reference (PMID): 9758823. Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
Feb 4, 2013 BCAS0225 Burkholderia cenocepacia J2315 New GO Accession: GO:1900192(IMP). New PubMed reference: 20971902. New PubMed reference: 17967860. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 14, 2010 BCAS0225 Burkholderia cenocepacia J2315 New gene name: shvR. New product name: shiny variant regulator, ShvR. New product name confidence: Class 1. New evidence reference (PMID): 19761612. Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
Apr 20, 2020 BCAS0225 Burkholderia cenocepacia J2315 New PMID: 30513124. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0236 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAS0293 Burkholderia cenocepacia J2315 New product name confidence: Class 1. New comment : AidA is essential for slow killing of C. elegans but has little effect on fast killing. New subcellular localization: Cytoplasmic. New subcellular localization confidence: Class 1. New PubMed reference: 15978077. New PubMed reference: 15557647. New PubMed reference: 19761612. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 29, 2010 BCAS0333 Burkholderia cenocepacia J2315 New product name: putative siderophore receptor. New product name confidence: Class 3. Dropped gene name: orbA. Pamela A. Sokol, University of Calgary
Apr 20, 2020 BCAS0335 Burkholderia cenocepacia J2315 New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Feb 4, 2013 BCAS0355 Burkholderia cenocepacia J2315 New GO Accession: GO:0009045(EXP). New GO Accession: GO:0042732(EXP). New PubMed reference: 23186665. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 30, 2018 BCAS0364 Burkholderia cenocepacia J2315 New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P232. Dustin Lavallee and Silvia Cardona, University of Manitoba
Feb 4, 2013 BCAS0409 Burkholderia cenocepacia J2315 New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New GO Accession: GO:0008237(IMP). New GO Accession: GO:0015628(IMP). New PubMed reference: 22848580. New PubMed reference: 12904566. New PubMed reference: 2645209. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAS0591 Burkholderia cenocepacia J2315 New product name: RND-1 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0592 Burkholderia cenocepacia J2315 New product name: RND-1 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAS0593 Burkholderia cenocepacia J2315 New product name: RND-1 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-1 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-1. New PMIDs: 19761586, 25926825. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Sep 15, 2008 Bcen2424_0011 New gene name: ecfB. New product name: sigma factor 70 EcfB. New product name confidence: Class 1. New homology: 90% identity to ecfB[B. cenocepacia J2315]. New evidence reference (PMID): 17784948. Literature review. Based on article by Cournoyer, B. Universite Lyon, France.
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