Strain Overview | |
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Organism Name | Burkholderia sp. MSMB1588 MSMB1588 |
Species | Burkholderia sp. MSMB1588 |
Strain | MSMB1588 |
Description/Title | Pathogen: environmental/food/other sample from Burkholderia sp. MSMB1588 |
Annotated Genes | 5951 |
Partial Genes | 75 |
Host Information | |
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Host Species Taxonomic Name | unknown |
Geographic Location | |
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Location Name | Australia: Northern Territory |
Isolation Source | soil |
Latitude/Longitude | 19.49 S 132.55 E |
Sample Provider | |
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Name | Jason Sahl |
jasonsahl@gmail.com | |
Institution | Northern Arizona University |
Date Collected | 2011 |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 5 |
Contig N50 | 3581356 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03449293 |
NCBI Taxonomy ID | 1636423 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5951 |
CDS | 5878 |
pseudo | 129 |
tRNA | 57 |
rRNA | 12 |
ncRNA | 3 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 2499 |
Cytoplasmic Membrane | 1233 |
Periplasmic | 197 |
Outer Membrane | 128 |
Extracellular | 102 |
Unknown | 1568 |
Unknown (This protein may have multiple localization sites) | 151 |
Flagellar | 11 |
Fimbrial | 2 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |