Burkholderia sp. MSMB1588 MSMB1588

Strain Overview
Organism Name Burkholderia sp. MSMB1588 MSMB1588
Species Burkholderia sp. MSMB1588
Strain MSMB1588
Description/Title Pathogen: environmental/food/other sample from Burkholderia sp. MSMB1588
Annotated Genes 5951
Partial Genes 75
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 5
Contig N50 3581356
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449293
NCBI Taxonomy ID 1636423
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia sp. MSMB1588 chromosome 2, complete sequence, whole genome shotgun sequence.
Burkholderia sp. MSMB1588 MSMB1588_2, whole genome shotgun sequence.
Burkholderia sp. MSMB1588 MSMB1588_3, whole genome shotgun sequence.
Burkholderia sp. MSMB1588 map unlocalized plasmid unnamed 1 MSMB1588_5, whole genome shotgun sequence.
Burkholderia sp. MSMB1588 map unlocalized plasmid unnamed 2 MSMB1588_6, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 5951
CDS 5878
pseudo 129
tRNA 57
rRNA 12
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2499
Cytoplasmic Membrane 1233
Periplasmic 197
Outer Membrane 128
Extracellular 102
Unknown 1568
Unknown (This protein may have multiple localization sites) 151
Flagellar 11
Fimbrial 2
T3SS 4

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF