Burkholderia pseudomallei MSHR346

Strain Overview
Organism Name Burkholderia pseudomallei MSHR346
Species Burkholderia pseudomallei
Strain MSHR346
Description/Title Sample from Burkholderia pseudomallei MSHR346
Annotated Genes 6189
Partial Genes 36
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name Australia
Isolation Source sputum of a melioidosis patient admitted to Royal Darwin Hospital, Northern Territory, Australia
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution
Date Collected 1995

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei 243
gltB
2		 ace
1		 ndh
1		 narK
12		 lepA
4		 gmhD
13		 lipA
15
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000182585.2
Assembly Status latest
Scaffolds
Contigs 2
Contig N50 4098576
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02470263
NCBI Taxonomy ID 536230
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia pseudomallei MSHR346 chromosome I, complete sequence.
Burkholderia pseudomallei MSHR346 chromosome II map unlocalized pseudoChromo_II, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 6189
CDS 6114
pseudo 108
tRNA 60
rRNA 12
ncRNA 3

Subcellular Localization

Localization Count
Cytoplasmic 2541
Cytoplasmic Membrane 1229
Periplasmic 199
Outer Membrane 148
Extracellular 94
Unknown 1767
Unknown (This protein may have multiple localization sites) 172
Flagellar 20
Fimbrial 5
Host Associated 1
T3SS 4

Replicons

Name Length GC
Burkholderia pseudomallei MSHR346 chromosome I, complete sequence. 4098576 bp 67.7%
Replicon details
Burkholderia pseudomallei MSHR346 chromosome II map unlocalized pseudoChromo_II, whole genome shotgun sequence. 3250369 bp 68.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF