Burkholderia mallei Turkey2

Strain Overview
Organism Name Burkholderia mallei Turkey2 - Assembly GCF_001279325.1
Species Burkholderia mallei
Strain Turkey2
Description/Title Microbe sample from Burkholderia mallei
Annotated Genes 4561
Partial Genes 304
Host Information
Host Species Taxonomic Name horse
Host Species Common Name horse
Geographic Location
Location Name Turkey: Ankara
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001279325.1
Assembly Status latest
Scaffolds 15
Contigs 302
Contig N50 30440
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02837870
NCBI Taxonomy ID 13373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4561
CDS 4503
pseudo 365
tRNA 52
rRNA 5
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1984
Cytoplasmic Membrane 921
Periplasmic 150
Outer Membrane 91
Extracellular 71
Unknown 1220
Unknown (This protein may have multiple localization sites) 128
Flagellar 26
Fimbrial 4
Host Associated 2
T3SS 2

Replicons

15 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF