Burkholderia mallei Turkey1

Strain Overview
Organism Name Burkholderia mallei Turkey1 - Assembly GCF_001279275.1
Species Burkholderia mallei
Strain Turkey1
Description/Title Microbe sample from Burkholderia mallei
Annotated Genes 4564
Partial Genes 215
Host Information
Host Species Taxonomic Name horse
Host Species Common Name horse
Geographic Location
Location Name Turkey: Ankara
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001279275.1
Assembly Status latest
Scaffolds 2
Contigs 244
Contig N50 37084
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02836929
NCBI Taxonomy ID 13373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4564
CDS 4504
pseudo 311
tRNA 55
rRNA 4
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2018
Cytoplasmic Membrane 917
Periplasmic 148
Outer Membrane 91
Extracellular 68
Unknown 1198
Unknown (This protein may have multiple localization sites) 128
Flagellar 24
Fimbrial 3
Host Associated 2
T3SS 2

Replicons

Name Length GC
Burkholderia mallei strain Turkey1 genomic scaffold scaffold1, whole genome shotgun sequence. 2073562 bp 68.8%
Replicon details
Burkholderia mallei strain Turkey1 genomic scaffold scaffold2, whole genome shotgun sequence. 3405791 bp 68.0%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF