Burkholderia mallei Turkey10

Strain Overview
Organism Name Burkholderia mallei Turkey10 - Assembly GCF_001279265.1
Species Burkholderia mallei
Strain Turkey10
Description/Title Microbe sample from Burkholderia mallei
Annotated Genes 4630
Partial Genes 75
Host Information
Host Species Taxonomic Name horse
Host Species Common Name horse
Geographic Location
Location Name Turkey: Ankara
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 2
Contigs 100
Contig N50 106918
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02837660
NCBI Taxonomy ID 13373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 4630
CDS 4571
pseudo 170
tRNA 53
rRNA 5
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2046
Cytoplasmic Membrane 923
Periplasmic 153
Outer Membrane 98
Extracellular 70
Unknown 1216
Unknown (This protein may have multiple localization sites) 136
Flagellar 23
Fimbrial 3
Host Associated 2
T3SS 3

Replicons

Name Length GC
Burkholderia mallei strain Turkey10 genomic scaffold scaffold1, whole genome shotgun sequence. 3367337 bp 68.2%
Replicon details
Burkholderia mallei strain Turkey10 genomic scaffold scaffold2, whole genome shotgun sequence. 2068110 bp 68.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF