Burkholderia mallei Turkey9

Strain Overview
Organism Name Burkholderia mallei Turkey9 - Assembly GCF_001279255.1
Species Burkholderia mallei
Strain Turkey9
Description/Title Microbe sample from Burkholderia mallei
Annotated Genes 4512
Partial Genes 437
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Turkey: Ankara
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001279255.1
Assembly Status latest
Scaffolds 31
Contigs 414
Contig N50 21464
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02837832
NCBI Taxonomy ID 13373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4512
CDS 4457
pseudo 406
tRNA 51
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1973
Cytoplasmic Membrane 903
Periplasmic 146
Outer Membrane 89
Extracellular 65
Unknown 1219
Unknown (This protein may have multiple localization sites) 122
Flagellar 23
Fimbrial 3
Host Associated 2
T3SS 2

Replicons

31 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF