Burkholderia mallei Turkey3

Strain Overview
Organism Name Burkholderia mallei Turkey3 - Assembly GCF_001279245.1
Species Burkholderia mallei
Strain Turkey3
Description/Title Microbe sample from Burkholderia mallei
Annotated Genes 4532
Partial Genes 422
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Turkey: Ankara
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 17
Contigs 414
Contig N50 22263
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02836930
NCBI Taxonomy ID 13373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 4532
CDS 4473
pseudo 459
tRNA 55
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1982
Cytoplasmic Membrane 910
Periplasmic 148
Outer Membrane 87
Extracellular 69
Unknown 1214
Unknown (This protein may have multiple localization sites) 128
Flagellar 23
Fimbrial 3
Host Associated 2
T3SS 3

Replicons

17 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF